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EBI Dbfetch

ID   ABBA01122429; SV 1; linear; genomic DNA; WGS; HUM; 2415 BP.
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AC   ABBA01122429;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276800970, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2415
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2415
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; cd7348b3b5d9d0dfef6aed2af75ce920.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270510.
DR   ENA-CON; GJ212032.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01122429.1:1-2415; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2415
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2415 BP; 748 A; 389 C; 480 G; 798 T; 0 other;
     aaaatatctt catatgataa cttgacagaa gcattctaag aaacttcttt gtgatgtatg        60
     tactcgtccc acagagttga acctttcttt tgatttagca gtctggaagc actctttttg       120
     taaaatctgc aagtggacat tttgtgcact tttaggccta tggtaaaaag gaaatatctt       180
     cacataaaaa ctagacagaa gcattttgat aactttcttt gcaatatgtg cattcatatc       240
     acagagttga gccttaattt gatttagcag ttttgaagca cccttttgat aatacctgtg       300
     attggacatt tggagtgctt tgatgccttt ggtggaaaag gaaatatctt cacataagaa       360
     ctagacagac gcattctgac aaacttcttt gtgatgtgtg cattcatctc agatagttga       420
     acatttattt tgattgaaca gctttgaaaa cctcttttgt ggaatctgca agtggacatt       480
     gggagtgctt tgaggcctat ggtagaaaag aaaatatctt cacataaaaa ctagacagaa       540
     gcattctgac aaacatcttt gtgatgtgtg cattcatctc acagagttga acctaacttt       600
     tgactgagca gttttgaaac actctttttg tagaatctac aagtggacat ttagagtgct       660
     ttgaggccta tggtggataa agaaatatca tcacacaaaa tatagacaga agcaatcttg       720
     gaaatttctt tgtgatgtgt gcattcatct cacagagtta aacctttctt ttgattgagc       780
     agttttgaaa cactctttct gtagaatctg caagtggata ttcggagtgc tttgaggcct       840
     atggtggaaa aggtaatatc ttcacataaa aactacgcag aaacattcta agaaagttct       900
     ttgtgatgtg tgcattcaac tctaagattt gaacctatct tttgactgag ctgttttgaa       960
     acaatctttt tgtagaatct gcaaggggat atttagagcg atttgaggcc tattgtggaa      1020
     aaggaaatat cgtcacataa aaactacaga aaagcattct acgaaagttc tttgtgatgt      1080
     gtgcattcaa ttctcagagt tgaacctatc ttttgataga gcagttttga aactctcttt      1140
     ttgtagaatt tgcaagtgga tatttggatt cctttgcggc ctacagtgga aaaggaaata      1200
     tcttaacata aaaactacac agaagcattc tgagaaacta ctttgtgatg tgtgcattca      1260
     catcacagtg ttgaacattt cttttgattg tgcagtttgg agacactctt ttactagtat      1320
     ctgcaagtgg atatttcgag cccttgtagg cctattgtgg aaaaggaaat atcttcacat      1380
     aaaaactaca cagaagcatt ttgagaaact cctgtgtgat gtgtgaattc atcttacaga      1440
     cttgaacctg tcttttgatt gagcagtttt gaaacactct ttttgtagaa tctgcaagtg      1500
     gatatttgca tcactttgag gcctatggtg gaaaaggaaa tatcttccca aaaaacctac      1560
     acagaagcat tctcagaaac ttctttgtga tgtgtgcgtt catctcacag agttgaaact      1620
     ttcttttgat tgagcagttt agaaacactc tttcatagaa tctgcaagtg catacttgga      1680
     gcgttttgag gcacatggtg gaaaaggaaa tatcttccca taaaaactac aaagaagcat      1740
     tctgagaaac ttctttatga tatgtgcatt gaacgcagag agttgaatct atcttctgat      1800
     acagcaattt ttaaaatcac tttttgtaga atctggaagt ggatatttgg agcgttttgt      1860
     atcctatggt ggaaaaggaa atatctttcc ataaatgcta cacagaagta ttctgaggaa      1920
     ctactttgtg atgtgtgcat tcaagtcata gagctgaacc tatcttttga tagagcagta      1980
     gtgaaaatct ctttttgtag aatcagcaag tggatatttg gaaacctttg caggctatgg      2040
     tggaaaacta aatatcttct tataaaaact tcacagaagc attctgagaa acttttttgt      2100
     gatgtatgca ttcatctcac ggagttgaac ctctctttca attgagaagt ttggaaacac      2160
     tatttttgta gaatctgcaa atggatatat ggagggcttg gggcctattg tggaaaagga      2220
     aatatcttcc catgaaaact acacagaggc attctgagaa acttccttgt gaggtgtaca      2280
     ttcaactcac caatttgaac atttctttgg atttagcagt ttggaaacac tctttttgta      2340
     gaatctgcaa gtagttattt ggatcgattt ggagcctatg tgggaaagga aatatcttca      2400
     cataaaaact acaca                                                       2415
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