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EBI Dbfetch

ID   ABBA01102021; SV 1; linear; genomic DNA; WGS; HUM; 1472 BP.
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AC   ABBA01102021;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276937860, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1472
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1472
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; f9acea3395b6992cf3418b6689b98cf9.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211841.
DR   ENA-CON; KI270305.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01102021.1:1-1472; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1472
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1472 BP; 417 A; 286 C; 325 G; 444 T; 0 other;
     tttgttgcgc tttcaggcct gtggtgaaga aggaaatatc ttcacataaa aactagagag        60
     aagcattgtc agagacttct tctttgtgat gactgcattc aactcacgga gtggaatgct       120
     ccttttgata cagcagcttg gaaacactct tttagaggga cctgcaagcg gatacttgga       180
     cctctttgaa gatttcgatg gaaaagggat aatcttccca taaaagctaa atggaagcat       240
     gctcagagac tactttgtga tgtttgcatt caactcccag tgttgtactt tccttttgat       300
     agagcagctt tgaaaccctc tctttctaga atctgcaagt ggacatttgg agggtttcga       360
     ggcctgtggt ggaaaatcaa ctatctactc ataaaagcta gatggaagca ttctccgaaa       420
     ctatattttg atgattcctt tcaagtcaca gagttgaaca ttccctttgg tagagccctt       480
     tggaaacaca cttttggtag aatctgcaag gggagatttg gaccgctttg aagcctatgg       540
     cagtagagga aatcaatgcc catgaaatct agacagtagc attctcagga aacactttgt       600
     gacgattgag ttcaactcac ggagctgaac attcctttgg atggagcagt ttcgaaacac       660
     actttttgta ggatctgcaa gtggatattt ggagtactat gtggccttcg ttcgaaacgg       720
     gtatatcttc acataaaatc cagacagaag ccttctcagt aacctctctg tgatgattgc       780
     attcaactca gagagttgaa cattcctttg gatagagcag tttcgaaact ctgtttctct       840
     agaatctgcc catggatagg tggaactctg tgaagatttc tttggaaacg ggaatatctt       900
     cacataaaga gtaaacagat gccttctcag aaacttcttt gtgaggcatg tgttcaactc       960
     ccagagttta accttgcttt tcatagaaca gttttgaaac attcttttcg tagagtctcc      1020
     aagtggacat ttcttgcgct ttcaggcctg tggtggaaaa ggaaatatct tcacataaaa      1080
     actagagaga agcattgtca gagacttctt ctttgtgaag actgcattca actcacggag      1140
     tggaaggctc cttttgatac agcagcttgg aaacactctt tcagagggac ctgcaagcgg      1200
     atacttggac ctctttgagg atttcgatgg aaaagttaaa atcttaccat aaaagctaaa      1260
     tggaagcatg ctcagagact actttgtgat gtttgcattc aactcccaga gttgtacttt      1320
     ccttttgata gagcagcttt gaaaccctct ctttctagaa tctgcaagtg gacatttgga      1380
     gggcttcgag gcctgtggtg ggaaaggaaa tatctactca taaaagctag atggaagcat      1440
     tcttcgaaac tacattttga tgattccttt ca                                    1472
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