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EBI Dbfetch

ID   ABBA01094943; SV 1; linear; genomic DNA; WGS; HUM; 1658 BP.
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AC   ABBA01094943;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276896525, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1658
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1658
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; b06e44ea15d0a57618d6ca7d2e6ac5d2.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211924.
DR   ENA-CON; KI270384.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1658
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1658 BP; 543 A; 338 C; 277 G; 500 T; 0 other;
     tccaaagaaa tcctcaaagg tatccaaata tctacttcca gattctacaa aaagactgtt        60
     tcaaaacggc tctgtcaaaa gtaaggttca actctgttac ttgagtacac acatcacaag       120
     gaagtttctg agaatgcttc tgtctggttt ttaggagaag atatttcctt tttcaactta       180
     ggcttcaaag cgctgccaat gtccacttcc aaatattaca aaaagagtat ttcaaaccag       240
     ctctatgaaa ggaagtgttc aactctatga gttgaatgca agcatcacag agaagtttct       300
     gagaatgctt ccgtctagat tttatgtgaa gatattcccg tttccaagga aatcttccta       360
     gctatctaaa tatcaacttg cagattctac taaaggagtg tttccaaagt gctgtatccg       420
     cacaaaggtt caactctgtt aattgaggac atacagcaca aagaagtttc tgagaatgct       480
     tctgtctaga ttttatatga agatatcccg tttccaaaga aatcctcaaa gctatccaaa       540
     tatctacttc cagattctac aaaaagactg tttcaaaacg gctctgtcaa aagtaatgtt       600
     caactctgat acttgagtac acacatcaca aggaagtttc tgagaatgct tctgtctggt       660
     ttttagtaga agatatttcc tttttcaaca taggcctcaa agcgctgcaa atgtccactt       720
     ccaaatatta caaaaagagt gtttcaaacc tgttgtatga agggaagtgt tcaactctat       780
     gagttgaatg caaacatcac agagaagttt ctgagaatgc ttctgtgttg attttatatg       840
     aggatattcc cgtttccaac gaaaccttca aagctatcca aatatccacc tgcagatcct       900
     acaaaaagag tgtttccaaa atgctgtatc aaaacaaagg ttcaactctg ttagttgaga       960
     acacacatcg caaataagtt tctgagaatg cttctgtcta ctttttattt gaagatattt      1020
     cctttttcac cacaggcctg aaagcgcttg aaacgtccgc ttgtagatac tacagaaaga      1080
     gtgtttcaaa cctgctctat gaaacggaat gttcagttct gtgacttgaa tacaaacatc      1140
     acaaagaagt tcctgagaat gcttctccct atattttata agtaatcccg tttccaacga      1200
     aatcctcaaa gctatccaaa tatccacttt cagattccac aaaaagagtg tttcaaaact      1260
     gctctgtaaa aagaaaggtt catctctgtt agttgaatac acacatcaca aacaagtttc      1320
     tgagaatgtt tctgtctagt ttttatgaga agatatttcc tttttcaaca taggcctcaa      1380
     agcgctccaa atgtccactt ccaggtagtg cacagagtgt ttcaaacatg ctctatgaaa      1440
     ggaagtgttc aactctatga gttgaatgca aacatcacag agaagtttct gagaatgctt      1500
     ctgtcttgat tttatatggg gatattcccg tttccaacga aacgttcaaa gctatccaaa      1560
     tatcaacctg cagatcctac aacaagagtg tttccaaaat gctgtatcaa aacaaaggtt      1620
     caactctgtt agttgagaac acacatcgca aataagtc                              1658
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