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EBI Dbfetch

ID   ABBA01092412; SV 1; linear; genomic DNA; WGS; HUM; 1308 BP.
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AC   ABBA01092412;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276881844, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1308
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1308
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 3724e1d70677d6b5c4bcf17fd40da111.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211915.
DR   ENA-CON; KI270393.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01092412.1:1-1308; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1308
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1308 BP; 430 A; 266 C; 229 G; 383 T; 0 other;
     gtccacttcc aggtagtgca ctgagtgttt caaacctgct ctataaaagg gaacattcta        60
     ctctgtgact tgaatgaaga catcacaaag cagtttctga gaatgcttcc gtctagattt       120
     tatgtgaaga tagtcccgtt tccaaggaaa tcttcctagc tatctaaata tcaacttgca       180
     gattctacta aaggaatatt tccaaaatgc tgtatccaca caaaggttca actctgttaa       240
     ttgaggacat acagcacaaa gaagtttctg agaatccttc tgtctagatt ttatatgaag       300
     atatcccgtg tccaacgaaa tcctcaaagg tatcaaaata tccacttgca gattctacaa       360
     aaagagtgct tcaaaactgc tctgtcaaaa ggaaggttca actctgtaac ttgagtacac       420
     acatcacaag gaagtttctg acaatgcttc tgtctggttt ttaggagaag atatttcctt       480
     tttcaacata ggccccaaag cgctgcaaat gtccacttcc aaatattaga aaaagagtgt       540
     ttcaaacctg ctgtatgaag ggaagggttc aactctatga gttgaatgca aacatcacag       600
     agaagtttct gagaatgctt ctgtctagat tttatatgaa gatatcccgt gtccaacgaa       660
     atcctcaaag gtatcaaaat atccacttgt agattctaca aaaagagtgc ttcaaaactg       720
     ctctctcaaa atgaaggttc aactctgtta cttgagtaca cacatcacaa gaaagattct       780
     gagaatgctt ctgtctggtt tttaggagaa gatatctcct ttttcaccat aagcttcaaa       840
     gcgctgccaa tgtccattcc aaatattaca aaaagaatat ttcaaaccag ctctatgaaa       900
     ggaagtgttc aactctatga gttgaatgca aacatcacag agaagtttct gagaatgctt       960
     ctgtgttgat tttatatgaa gatattcccg tttccaaaga aaccttcaaa gctatccaaa      1020
     tatccacctg cagatcctac aaaaagagtg tttccaaaat gctgtatcaa aacaaagttc      1080
     aactctgtta gctgagaaca cacatcgcaa ataagtttct gagaatgctt ctgtctagtt      1140
     tttatttgaa gatatttcct ttttcaccac aggcctgaaa gcgcttgaaa cgtccgcttg      1200
     cagatactac agaaagagtg tttcaaacct gctctatgaa agggaatgtt cagttctgtg      1260
     agttgaatgc aaacatcaca aagaagttcc tgagaatgct ctccctag                   1308
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