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EBI Dbfetch

ID   ABBA01087767; SV 1; linear; genomic DNA; WGS; HUM; 1788 BP.
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AC   ABBA01087767;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276853864, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1788
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1788
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; b9b1baaa7abf206f6b70cf31654172db.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211922.
DR   ENA-CON; KI270386.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1788
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1788 BP; 589 A; 367 C; 298 G; 534 T; 0 other;
     gcttgcagat actacagaaa gagtgtttca aacctgctct atgaaaggga atgttcagtt        60
     ctgtgacttg aatgcaaaca tcacaaagaa gttcctgaga atgcttctcc ctagatttta       120
     tatgtaatcc cgtttccaac gaaatcctca aagctatcca aatatccact ttcggattcc       180
     acaaaaagag tgtttcaaaa ctactctgta aaaagaaagg ttcatctctg ttagttgaat       240
     acacacatca caaacaagtt tctgagaatg cttctgtcta gtttttatgg gaagatattt       300
     cctttttcaa cataggcctc aaagcgctcc aaatgtccac ttccaggtag tgcaaaaaga       360
     gtgtttcaaa cctgctctat aaaagggaat attcaactct gtgacttgaa tgcaaacatc       420
     acaaagcact ttctgagaat gcttccggct agattttata tgaagatatt cccgtttcca       480
     aggcaatctt cctagctatc taaatatcaa cttgcagatt ctactaaagg aatgtttcca       540
     aaatgctgta tcgacacaaa ggttcaactc tgttaattga ggacatacag cacaaagaag       600
     tttctgagaa tgcttctgtc tagattttat atgaagatat cccgtgtcca acgaaatcct       660
     caaaggtatc aaaatatcca cttgcagatt ctacaaaaag agtgcttcaa aactgctctg       720
     tcaaaattga aggttcaact ctgttacttg agtacacaca tcacaagaaa gattctgaga       780
     atgcttctgt ctggttttta ggagaagata tctccttttt aaccataggc ttcaaagcgc       840
     tgccgatgtc cacttccaaa tattacaaaa agagaatttc aaaccagctc tatgaaagga       900
     agtgttcaac tgtatgagtt gaatgcaaac atcacagaga agtttctgag aaggcttctg       960
     tgttgatttt atatgaagat attccccttt ccaacgaaac cttcaaagct atccaaatat      1020
     ccacctgcag atcctacaaa aagagtgttt ccaaaatgct gtatcaaaac aaaggttcaa      1080
     ctctgttagt tgagaacaca catcgcaaat aagtttctga gaatgcctct gtctagtttt      1140
     tatttgaaga tatttccttt ttcaccacag gcctgaaagc gcttcaaacg tccgcttgca      1200
     gatactacag aaagagtgtt tcaaacatgc tctatgaaag ggaatgttca gttctgtgac      1260
     ttgaatgcaa acatcacaaa gaagttcctg agaatgcttc tccctacttt ttatatgtaa      1320
     tcccgtttcc aacgaattcc tcaaagctat ccaaatatcc actttcggat tccacaaaaa      1380
     gagtgtttca aaactactct gtaaaaagaa aggttcatct ctgttagttg aatacacaca      1440
     tcacaaacaa gtttctgaga atgcttctgt ctagttttta tgggaagata tttccttttt      1500
     catcataggc ctcaaagcgc tgcaaatgtc cacttccaaa tattacaaaa agagtgtttc      1560
     aaacctgctg tatgaaggga agtgttcaac tctatgagtt gaatgcaaac atcacagaga      1620
     agcttctgag aatgcttctg tcttgatttt atatgaagat attcccgttt ccaatgaaac      1680
     cttcaaagct atccaaatat ccacttgcag attccacaaa aagagtgttt ccaaaatgtt      1740
     gtatcaaaag aaggttcaac tctgttagtt gaggatacac atcgcaaa                   1788
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