spacer

EBI Dbfetch

ID   ABBA01086253; SV 1; linear; genomic DNA; WGS; HUM; 1428 BP.
XX
AC   ABBA01086253;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276844980, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1428
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1428
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 301ef75a6b2996d745eb3464bd352b57.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211877.
DR   ENA-CON; KI270338.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1428
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1428 BP; 400 A; 265 C; 316 G; 447 T; 0 other;
     gaagtattct cagacagttc tttgtgatat gtccattcaa ctcacagagt tgaatctttc        60
     ctttgataga gaagattgga aacattcttt ctgcatactc tgcaagtgtt catttggagc       120
     gcttagaggc tcatggtgga aagtgaaata tcttcacata taaactagac agaagcattc       180
     tcagaaacat ttagggatgt gtgaactcaa ctcacggagt tcaactttcc ttttgataga       240
     ggtgtcttga aatcctgctt ttgcagaatc tgcttgagga tatttggagc tctttcagga       300
     attcgttgcc aacgggatat ctgcacaaaa ttgacagaag cgttctcaga accttttttt       360
     gggatgtgtg gattcaactc acacagttca accttccttt tgatagagca gtcttgaaat       420
     actgcttttg aagaatctgc ttcaggatat ttggagctct ttgaggaatt cgttgcaatc       480
     gggatatctg cacatacaaa ttagacagaa gcattcccag aaactttttc gtgatgtgtg       540
     gattcaactc acaaaattca accttcctat tgatagagca ttcttgaaac actgcttggg       600
     tagaatctgc ttcaggatat ttggagctct tggaggaatt cgtggcaaac gagatatctc       660
     cacatacaat ctagactgaa gcattctcag aaaattttgt gttgtgtgca ttcaagtcac       720
     agagttgaag gtctttttgg atagatcagt tttgaaacca tccttttcta gaatcagctt       780
     gaggatattt gtaggtcttt gaggaattcg ttgtaaacgg gatatctgca catacaaggt       840
     agatagaaac atggtcagag actttttgtg atgtgtgaac tcaactcaca gagttcaacc       900
     tttctttcga tagagcagtt ttgcagcact gcttttgcag aatctgcctg aggacatttg       960
     gagctctttg aggaattcgc tgtaaacggg atgtccgcac atacaaacta gacacaacta      1020
     ttctcagaaa cttttttggg atatgtggat tcaactcaca gagttcaccc ttccttttga      1080
     tagagcagtc ttgaaatact gcttttgtag aatctgcttg aggatatttg gagctcttga      1140
     ggaattcgtt gtaaacgggg tatctgcaca tacaaactgg acggaagcat tctcagaaac      1200
     ttttttgtga tgtctgcatt caactcacag agctgaacct tcctttggga gagcagctct      1260
     gaaacagtgt ttttgcagta tcacccaagt ggatatttgg agcgatatga ggcctatggt      1320
     ggaaaaggag ataccttcac atggaagcta cacagaagca ttctcagaaa ctgctttggg      1380
     atgtgtgcat tcaactcaca gaggtgaacg ctttcttgat agagcagt                   1428
//


spacer
spacer