Dbfetch

ID   ABBA01065754; SV 1; linear; genomic DNA; WGS; HUM; 1805 BP.
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AC   ABBA01065754;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276848308, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1805
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1805
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 95ea0b50aea84d69c7be3d336c7e05dc.
DR   ENA; ABBA01000000; SET.
DR   ENA; ABBA00000000; SET.
DR   ENA-CON; DS486227.
DR   ENA-CON; GL000186.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01065754.1:1-1805; homo_sapiens.
DR   PubMed; 17803354.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1805
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1805 BP; 390 A; 533 C; 148 G; 734 T; 0 other;
     tttgagtcca ttgattccat tctattccat tccattcgat tccaatacgt tggtttccat        60
     tttgtttcag tgcattccat tcgagtccat tctgttccag tccattcaaa tccagtccat       120
     tccattgatt ttaattcctt ttgattccat tccaatcgat accactctgt tccattccat       180
     tttattccat tttattacat tccattgcac tgcattatat tcctatattc cataccattt       240
     cattccattc aattccattc acttgcattc cattcctttc catttgaaaa cattcccttc       300
     aatgccattc aattcgtagc aattacattg caatccatta cattccagtc cgttctactc       360
     cagtccattc cattccggtc aattccattt gatccctttc cattcgattt cgttacatac       420
     tattgcattc ccttcatttc cagttgattt gaataaattc cattcgagac cattcctttc       480
     gagtccattc tatttgaatc caagccattc gtgtccatta aatttctgtc catttcattc       540
     cattccattc cattcaatgc cgttccattg gattctattc cattcgaacc cattgcattc       600
     gagtgcattc cattccattc cattcgatgc cattccactt gattctattc cattcgaatc       660
     cattccattc aattagaatc cattccattc cattccgttc cttccgattc cattccattc       720
     ttttcctttc cattccattc ccttccgatc cattccatgc catttgttac cattccattc       780
     tagtcttttc cactccactc cattccattc tagttcattc tattccagta cattgcctat       840
     gagtccattc cattccattt tttaaattag attctattcc attatattac tttcgattcc       900
     attcaattcc attccattcc attccaatcg attccactcc aatcgactcc attccgttcg       960
     agtccattcc atcccattcc attccattct gttatttcca attcctatcc gcttaattcc      1020
     atttcgttcc agtccattac attcgtgtcc attccattcg agtccattcg attccagtcc      1080
     attccatttg attccattct gtttgattcc attccattag attccattcc aatcgatttc      1140
     tctctgttcc tttccatttc tttccattca atttcagtcc actgcattcc ataacattcc      1200
     ataccattct attcaattcc tttctatttg agccaatggc tttgcaatcc attacctttg      1260
     agtccgttct attcaagcca gttccattcc tttccattcc attcgattcc tctcatacca      1320
     ttgcattcct ttcgattcca ttctattaga gtaaattaca tgcgagacca ttacttttga      1380
     gaccattcta tgagttcatt gctttccatt ccatttgatg tcattctatt cgattctatt      1440
     ccattcgata ccattccatt ccattccgtt ccatccgatg ccataggatt ctattccttt      1500
     ccattctatt ccatttcatt ccattccttt ccataccatt ccattccatt cgtttccatt      1560
     ccattccagt ccattccagt ccagtatatt caattcgatt ccattccatt ctcctccatt      1620
     ccatttgagg ctattccatt tcattccatt tgatgtcttt gcattacaat tcattccatt      1680
     ttatttcttt catttccatt caattccatt caatttgatt ccattccact tgattccatt      1740
     ccattcgact ccattccaat cgtgtccatt ccatttccgt tcccttaaat accattccat      1800
     gcaat                                                                  1805
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