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EBI Dbfetch

ID   ABBA01065752; SV 1; linear; genomic DNA; WGS; HUM; 1712 BP.
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AC   ABBA01065752;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276908426, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1712
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1712
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 8b4476507ca515f2142880ab80511a08.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; DS486227.
DR   ENA-CON; GL000186.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1712
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1712 BP; 378 A; 481 C; 133 G; 720 T; 0 other;
     tattgcattt tatactattt cattccattg taatcctttc aattcctttt gatttcattc        60
     catttgattc caaggcattt gaatcaatta catttctgta cgttacattc gaatccattc       120
     tattcctgtc cattccattc tggtatattc cattcaattc cattccattc gattccattc       180
     catattattg aattactttc tattccttct tatttgaata aattatagtc gagaccattc       240
     ctttctcgtc cattctattt gagtctactc cattcaattc cattacattt gggtccattc       300
     catcccattc gatccgatgc cattccattc gattctattc cattagagtc catcccattc       360
     gagtccattc tattttattc gattcgattc gattcgattc cattccattc cattccattt       420
     tattcctttc cattccattc caccccagta gatgccattc cattctattc tattccattc       480
     aactccattc cattccattc cgttccactg attccattcc attctattcc tttccattcc       540
     attccattca attccattcc tcagcagtcc attccattcg ggtccattcc tttgctttcc       600
     attgcattcg agtccattcc attccattcc actccaatac actccatatg tttccattac       660
     actccattcc gttgtattcc ttttgcttcc gttaaatttc attccattca attccattcc       720
     atacgattcc atttcatttg actcaattcc attcgagtca aatgtattcc tttccattcc       780
     attctgttct gttcgattcc aatccgtttg actccatttt gttccagtcc attccattcg       840
     aatctatcac attgcagtcc atttcattga ttccattcca ttcaattcct ttccattcga       900
     ttcctttcca ttcaattcca ctccgttcct ttccatttca ttccattcta ttccatttaa       960
     ttgcattcca ttccattcca tttgattata ttccactcga ttccattcca tttgaatcaa      1020
     ttaaattgca atgcattaca ttcgagtccg ttctattcct gtccattcca ctctgatcaa      1080
     ttccattcca ttccgttgca ttcgatatct ttgcattaca atccattcca ttctatttct      1140
     tttgatttct tttaattaaa ttcgattcca ttgcgttcga ttacattcca ttcatttcca      1200
     ttccatttga ttccgttcca ttcctttccg ttcggtttca atccactcga ttcctttttg      1260
     ttcctgtcca ttccattcta atccattcaa gtccatttaa atctagtgca ttccactcga      1320
     ttcccttcca ttcaattaca tttcgttcaa ttccattaaa ctcgtttcca ctccgttcca      1380
     ttccattgca ctccattcca ttccattgca ttgcattcca ttgcattaca ttccaatcca      1440
     ttctttttga tttcactcca ttttattcca ctccattcga atcaattatt ttgaaataca      1500
     ttacattcga gtcctttcta ttccagtcta atatcttctg gtacattcca ttcgattcca      1560
     ttccacacta ttgcattaca tttgattcca ttccattcca ttcgattcca ttccatacta      1620
     ttgcatttca cttgatagca ttctattcga ataaatttca ttcaaggcaa ttcttttcta      1680
     ttccattata tttgagtcca ttcatttcca tt                                    1712
//


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