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EBI Dbfetch

ID   ABBA01037349; SV 1; linear; genomic DNA; WGS; HUM; 5886 BP.
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AC   ABBA01037349;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276777556, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-5886
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-5886
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; c5aea2c17e2c8dce736cfb8733450206.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270442.
DR   ENA-CON; DS486450.
DR   ENA-CON; GJ212115.
DR   ENA-CON; GJ212001.
DR   ENA-CON; GJ212127.
DR   ENA-CON; GJ212164.
DR   ENA-CON; GJ211964.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01037349.1:1-5886; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..5886
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 5886 BP; 1809 A; 1222 C; 1317 G; 1538 T; 0 other;
     gggtacctgg accggccctg ggatccccag gatgctcagg aattctttct tgtcattctt        60
     gacagccctc ctctgtgtgg agactctctc tggacctgga actcagggat cctaggcagg       120
     tcagctggaa gggaagacac gcctctccat accaagcctg aggttcaccg cgaaagagag       180
     gccgccgctc tgcccccaac ccgccccaac cccgccccaa cctgctcctc cagcagagcc       240
     cagtggtcgc cctggctgag gagtggttcc agcaaagcgg gctcttccac gtccttcagc       300
     tcccacagtg gcgccggatc taggaaatgt tgtgcctttt gctgaaactc tggggttgac       360
     aggagctcat ctaacaggct ggaggtgagt gcagatgagc tccccggctc ctggagctgt       420
     tgagaggcgc ctggatggct ggcatctgtt cttgacgcgg aggcctccgg ggtcgcgatc       480
     tctgcaggtg gaggtgcccc gtcttcgggt tcccatgccg ccctggcgac ctggggctcc       540
     agccccacca cggattccgg tgggacgtgg gtggcacaag cacaccttgc ccctgtgact       600
     cagcttgagg gggcccaaaa tgagcacgca cccagcaggc cctcgcgcag cggtttctgg       660
     tcttcctgtg atttgttggg gtgcagaggc caccagggag tctgaggatg ggagagcccc       720
     agttccagag gagccagggc agggaacaca aagccccaca tgcctgggca tgttgggaga       780
     gtccttctgc ctgcgcagcc tggctgggct ggagcagggg gatggccctt gctgcctggc       840
     tcacgaaagc ccccactggg agagccccag gcgcgcaggg catgtgcggt gtcggaagcg       900
     ccattcccca cgccctgttg tgggtgaact cgatagagga gggaggaggg tgacacccac       960
     cgggggtgcc aattagtaac cacagtggcc tcaaagaact caaatgaaag gaagacttgc      1020
     atgtctctca cttgaagtcc agagctagaa atgattaagc ttagtgaaga tgtagaattt      1080
     tcatagctag agagaagtca atgcttggct tcaaaacttc aaaggatggg ctgactctct      1140
     ttgaggacca ctgcagctgg tgactttaag ttacagccag tgctcattga caactctgaa      1200
     aatctcaggg cccttaagaa ttatgcaaaa tctattcttt ctgtgctcta gaaatggaac      1260
     atccctgtct gggtgacagc acatctgtta atggcatggt ttactgaata ttttaatccc      1320
     aatattgaga cctactgctc agaaaaaaaa gtgattcctt taaaaagatt gttgcttggc      1380
     cagacatagt ggctcacacc tgtaatccct gcactttggg aggccgagga tcacctgagg      1440
     tcaggagttc aagaccagcc tggccaaaat gatgaaaccc catctctaat aaaaatacaa      1500
     aaaaattagc cgggcatggt ggtaatacct gtaatttcag ctactcggga ggctgaggca      1560
     gaagaatggc ttgaaccctg gaggcggagg ttgcagtgag ccgagaccac accactgcac      1620
     tccagcctgg ggaacaagag cgaaactatg tcaaaaaaaa taataataat aaaataaaat      1680
     aaaataaaat aaaaggaaaa aggaaaaaaa gattgctgct tattgacaat tcacctagct      1740
     acccagaagc ttagatggag atgtacttgg aaattaatgt tattttcatg gctgctaata      1800
     caatatttac cttcagcctg tggatcaagg agtggttttg actttcaagt gtttttatta      1860
     ataaatgcat tttgtaaagg tatggctatc atagatagtg atttctttga tgaatctgga      1920
     taaactgaat tgaaaacctt ttggaaagga ttcaccatta atcctttcat gatatttgaa      1980
     cctcctcccg tgaatcacaa atgtctttac tagcaatcct taaatgccat taaggacatt      2040
     tgtgattgat gggaggaggt tgaaatatta acattaacag gagtttggaa gaagttgatt      2100
     ccagccctca tggatgactt tgagggctca ggatgtcagt ggaggaagtc cctgcagatg      2160
     tggtagaaat cgcaagacaa ctagaattaa tattagggcc ttaaggtgag atgaaattgc      2220
     tgtaaactca tgatgaaact tgaacaaata gggagttgct tcttatggac gagcaaagaa      2280
     aatattttct tgagatggaa tctaatccag gtggagatgc tacaaatatt gttgaaatga      2340
     caactaagga tttagaatat tccataaacc tagttgataa agcagcagca ggatttgaga      2400
     gggtttactc caattttgaa aaaagttcta ctcttgataa aatgctgtca aacagcatca      2460
     catgctacag ggaaatcttt tgtgaaagga acagacttca ttttttgaag aaattgaaac      2520
     aggcacccaa ccttcagcag cccccacact gattagccag cagtcatcaa tatagaggca      2580
     agaccctcac cagcaaaaag attatgactt ggtgaggctc agatattcat tagcattttt      2640
     tagcactgat gtattttaac ttaaggtatg tacacagttt ttcagacatg ctattaatta      2700
     ctaattaata attaaatact cattagacta caatatagtt taagcataac tttaataagc      2760
     actgggaaac aaaatgttta tgcaactaac ttgattgtaa catttgcctt attgcagtgg      2820
     tctggaacta aacccacaat atctctgagg tgtgcttgta ggtttttggt tgtaacattt      2880
     gccttattgc agttgtctgg aaccaaaccc acaatatctc tgagtatgct tgtaggtttt      2940
     tggttgttct ttgttttgag atggggtttc gctctgtcac ccaggacaga gtgcagtggc      3000
     atgatgatag ctcactgcag cctcaaactg ctgggtcaag tgatttttct atcatagcct      3060
     cctggctggg tctacaggca tgcagcacta tgcctggcta ttttttttaa tacttttttt      3120
     gtagagacgg gatctcacta ttttgcccag ctggtcttga actccggggc tgaagcaatc      3180
     cagccacttc agcctccaaa agtgcagcca ttacaggctt gagccactgc acccagcttg      3240
     tctgcagttc ttaaaacaaa aacggccagg cgtggtgtct gacgcctgta atcccagcac      3300
     tttgggaggc caaggcaggt ggatcacaag gtcaggagtt cgagaccagc ctggccaaga      3360
     tggtgaaccc agtctctact aaaaatacaa aaattagccg ggctcagtgg cgggcacctg      3420
     tagtccctgc tacttgggag gctgaggcag gagaatctct tgaacccggg aggcggaggt      3480
     tgcagtaagc cgagatcgtg ccactgcact cccaccttgc gacagagcaa gattccatca      3540
     aaaaaaagaa caaacgtaat ttaaaagatt aaaagttaag atagattttt acaaatgtat      3600
     atatctacca ttacagtatc atacagaatg gttttactgc cgtgaagatt ctctgtgctc      3660
     tgtgcatcca tctcttcctt ccccttggtc catggcaacc actgatcttt ctactgttcc      3720
     catagtttca ccgtttccag aacgtcatat aatttgaatc gaacagtacg tagacttttc      3780
     ggattggctt cttcttttag caatatgcat ttaagtttcc tccatgtatt ttcttgtggc      3840
     ttggtagatc atctcctgtt agcggtgaat aatatcccat tgccattata cttttgtcat      3900
     gactcagaaa gtacaatgtg aagagtaaat aagtatgaat gtgcactgta agctttgagt      3960
     gataatgaag ggtcaaggta ggttcctggt tgtcacaggt gtgctcctgt gaggcaggaa      4020
     gctgtagtgg ggaggctgtg tgtggggaaa gggacatatg agaagtctgt actctctgct      4080
     ccgtttagct gtgaacccgc acttctctaa aatataaaat tagttaaaat taagagcaaa      4140
     aaattagaaa aattaaaaca ttacaatgta tcatatagtt ttcacatcac aagacagaaa      4200
     aagacataat aaaagaaact gtagaaaaca acaaggatag gaataaaaat catcagtgat      4260
     agaaggcaga aaacagaaac gtggagccaa acacattcat tattttaatc attagttata      4320
     ctcatttata ctaatttata ttgatttaac atattaattt tgactaaatg gcattaaagg      4380
     aggtttgagg aatttgcatg tcacattctg gatgagagga ctcaataata ttaactcttt      4440
     agtttgctgt aaattattta aaaatatgct caaattccaa taaaaattcc aagaaaaatg      4500
     ttttcgaaca agaaaatgtg attttaaatc cacaattgaa cacacacgag agccaatttt      4560
     ataaaattta ctataagata tttaagattg ttattactat tcaaaattaa acaaatttga      4620
     aatggcacaa aaataaacac attaatgaaa gagaataaaa aacacagaaa ttgagtgtaa      4680
     ttttatctag taacagggta atattttaaa cccacaaaac agagccattt ttccatttat      4740
     gatgttaaaa tattgggtaa tgatttgaga atataaaatg atagaattga atcctggtcc      4800
     cacaccttac ataaaagtta attccagtat taaatgtaaa aaaaaaaaag agagagaaaa      4860
     gaaaagaaaa ttagatgtac ttgtgtttta tgaccttgag aatgaatgaa tgtcttctaa      4920
     aatcaaaatt gtgaacagaa actatataaa aaggaataaa cctaacgtac ctaaaacgta      4980
     aattcttaca catttcaaca gcaagtaaat agcacaaaac aaactgggga catttttaca      5040
     acaattatgt tagatgaaag ttaaaatcct tatgacatat acaatgtata aagcagtatt      5100
     attaccacca ttattaatac cattatgatt acctggtctt cccacgcccc agtcctcttc      5160
     tggtgcccta tggtgaaaca gagccctccg tctctggcca cagtgaggga tccagcagga      5220
     accctgccta agccctcaga gggtgtgagc caaaccagga catcacattc cctcctgcaa      5280
     tgatgcagat atccactcac gacagagatt tggtacctct ctggaaaagc tgtgtaacaa      5340
     ttattgcaga aacttgtttc ttatgttccc agacacatgg agaaagctgg tctggaagac      5400
     tgatgtccac atgctaagag aagcagtcac tcataacaca cactgcacac accacaccat      5460
     gtgcacatgc acacacaccc cacacacaga caccacacaa acagcacaca caccatgtgc      5520
     acacgtgaag gggtggcttg cccctccaca cttgtgggcg tttctcatcg ggtggaacaa      5580
     gagacttgag aaaagagaca cagagacaaa gtatagagaa agaaaagtgg gcccagggga      5640
     acggtgctca gcatacggag gaccaaggcc ggcaccagtc tctcagttcc cttagtattt      5700
     attgattatt atcaggcgtt tctcagagag ggggatgtgg caggacaata gggtaatagt      5760
     ggagagaagg taagcaggaa aacatatgaa caaatgtctc tgcatcataa acaaggtaaa      5820
     gaaaaaagtg ctgtgctttt gatgttcata tacataaaca tctcaatgcc ttaaagagca      5880
     gtattg                                                                 5886
//


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