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EBI Dbfetch

ID   ABBA01037348; SV 1; linear; genomic DNA; WGS; HUM; 9996 BP.
XX
AC   ABBA01037348;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279014068, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-9996
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-9996
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 5d20bb04ef64cf3d2ed616e5d154db9a.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270442.
DR   ENA-CON; DS486450.
DR   ENA-CON; GJ212115.
DR   ENA-CON; GJ212001.
DR   ENA-CON; GJ212127.
DR   ENA-CON; GJ212164.
DR   ENA-CON; GJ211964.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01037348.1:1-9996; homo_sapiens.
DR   RFAM; RF00001; 5S_rRNA.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..9996
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 9996 BP; 2940 A; 2429 C; 2286 G; 2341 T; 0 other;
     tgcaggaata gaaacacact tgagaaatcc atggggaatg aaaagagagt ggctgagcag        60
     cagcagattg tcaaaaagga aatcaagaag gagcagccaa agaggttgat ggagaaccag       120
     gagaaagaag gtgacactga agccaaggga gaggaaagtg tttcagcatc tctgggaaaa       180
     aatgacatgc tctgtcttaa ccttgccgtt ttatgagtca tatagccaca ttccaggtta       240
     tgagaagtcc agcactaaag atgtttcttt taatttgctt aacccaacat ttgccagaat       300
     aatctgggct cagtgtgagt gtgtgtacgt gtgtgtgcct gtgtgttcta ctaatgtctc       360
     actgaggcta gtgctgtaca caacataatt tttaaaacac tggttttatc catctttttg       420
     ttcagctgca gcaacattta caaaggtcaa ctttgatcat gtgtcttcat tactaaagga       480
     gacaaaacaa actaatgaat aaagcccacc tggcagtggc tcctcactac ctgtacaacg       540
     gagaccacct gccttggcct gggtgccctg tgctgacctg gccgtgctgt cttctgtctg       600
     ctgctttgcc tcccctttcc tcctggagaa ggtagagatg ttctgagctt tggctcgtct       660
     ggaacatgtg tccttcccct catgtggccc atgttttcct gagtccactt taatctcgtt       720
     taagggtata gaactttcct taaagctttt ggtcaggtct cactctctat gctgtcttcc       780
     tgccacttct acaatgtaca tactttactg atacattaat tatgctatac cagccaaggt       840
     ttttatttct ataacatttt ataccatcat tttttttaga gattagttca tttatttatt       900
     cagtctttcc acaatataat tgtatgtcat ataatttcat atttattttc attggtgttt       960
     atatatcttt tgtgtaaaaa tggaggcttt ctaaatagat cttccttaat gttgaaagaa      1020
     caaggttaca tgtcttggtc tcagccaaaa gaagttcccc acattaccag gagggaaata      1080
     aacacttgca ttgttgcatt agatattctt acagagaaag agaaccatgt gtaatggaaa      1140
     attgctaact ttgcctcagg gagaccaggc tgattcacta agaaagtctg aattggttta      1200
     gaaagcatag ttctgagttt tctagaagga caaaagttag agtagggcat aagaagtaat      1260
     gcccatatca aaaaattaga aatatctcaa attaaccacc taacatcaca actgaattag      1320
     agaagcaaga agaactcaac cacaaagctt atagaagaca agaaataact aaaatcagag      1380
     ctgaattgaa ggaaagtgag acatgaaaaa ctgttcaaaa gatcacttaa tcaaggtttt      1440
     ttgaaaaaat taataagata gatagggcac tagctagatt aataaagaag aaaagagaga      1500
     agattcaaat aaacaaaatt agaaatgatg aagggaatgt taccactgac cccagagaaa      1560
     taaaaataac aaccagcaac tactatgaac acctctatac acacaaacta gaaacactag      1620
     aagagattaa taaattcctg gacacatata ctctctcaag actgaaccag gaagaaattc      1680
     agtctctgag cagacaaatt atgagctcca aaaattgaat tcataataaa tagcctatca      1740
     acaccccccc ccaaaaaaaa acccaggacc tgatagatta acaaatttta acagatgtac      1800
     aaagaagagc cagtaccagt cctactgaaa ctatttcaag aaatagagga ggagggactc      1860
     ttccccaact tgttctacga gaccagaatc atcctgatac caaagcctgg cagtgacaca      1920
     aaaaaagaag aaaacttcag gccagtatcc ttgatgaaca tccattcaat aatccacaac      1980
     aaaatacttg caaactgaat ctagcaacac atcaaaaggc taattcgcca tagtgaagta      2040
     agcttcttcc ctggaatgga aggttggtcc atcatgggca aatcaataaa atgtgattca      2100
     taacataaac taaactaaag ataagaacca tatgattgtc tcaatagatt caggaaaggc      2160
     tttcagtaaa attcaacaaa gcttcatgtt aaaaattctc aataaatgag gtatcaaagg      2220
     aacatacctc aaaataataa aggtcaccta tgacaaactc acagccaaca ttatactaaa      2280
     tgggcaaaat ctggacgcat cctccttgaa acccgcacaa gacaaggatg ccctctctca      2340
     ccactcctat tcaacatagt attagaagtc ctttctggag caatctgaca agagaaagaa      2400
     atgaagggta tttaaataga aagagaagtc caactacctc tgtttgcaga caacataatt      2460
     ctctatctaa accttatagt tgtgacccaa aaactcctta agctgataaa caacttccac      2520
     aaagtttcgg gacacaaaat caatgtacga aatttgctag cattcctata caccaagaaa      2580
     agccaaacta agagccaaat cagagaggca attttattca caatttccat gaaaagaata      2640
     aagtacatac gaatacagct aaccagggag gtgaaaaatc tctacaatga aaattacaaa      2700
     acactgctca aagaagtcag agaagacaca cataaatgaa aaatcattcc atgttaatgg      2760
     agagaaagaa ttaatatcat ttaaatggtt gtactgccca aggctattcc tattaaacta      2820
     ccaatgacat gcttcacgga agtagaaaaa agctattcaa aaattcatat agaaccaaga      2880
     aagaacctaa gtagccaagg aaatcctaag caaaaagaac aaagcttgag gcatcacatt      2940
     acccgacttc aaactatact acagcactat agtaaccaaa acagcatggt actagtacaa      3000
     aagcagacac atacaccagt ggaatggaat agagaggtta gaagtaagac cacataccta      3060
     caactatcta atctttgaca aagctggcaa aaacaagcaa tggggaaaag attccctatt      3120
     caataaatgg tgctgggata actggctagc gatatgcaga agattgaagt tggacttctt      3180
     ccttatacca taagcaaaaa tcactcaaga tggattaaat acttaaatgt aaaacccaaa      3240
     actataaagg ccctggaaga caacatagac aatcccatcc tggacataga aagaggcaaa      3300
     gatttcatga taaagacatc aaaaaaacaa atacaactat tgacaagtgg gatctaatta      3360
     aacttaaaac ttccactcag caaaagaaat tatcaataga gtgaacagac aacatataga      3420
     atgagaaaaa aatatttaca aactatgtat ctgacaaaga tctaatattc aatataagga      3480
     acttaaattt acaagagaaa aacaaaaaac cctatgaaaa agtggccaaa gccctgactt      3540
     ctgcatggca cttctggacc cagccaggga ctgagggatc tcactgccct aaaggaaaga      3600
     acacaggcct gtctggcttt gccaactgct aaatgtagag accaaagacc ttgagtgaac      3660
     ataggcagtc gtcagaaagt gcatgcagca ggacttgagc aagacccgtg ctgtggtagc      3720
     ttcaggtctg atccagggca gtcatagtgg tggtggccag gggtgcttgt gtctttcttc      3780
     tcccagcttt aggtggcttc aaacagagag aaaaactctt tatctttgag agaaaataag      3840
     ggtagggaaa aagagtctct ggccagtaat ctagaaaatt ctcctggatc ttgttgaagg      3900
     ctgtcagggt ggtacttctc tgagtctgga agaattacag tattattggg tataaggtgc      3960
     cccataaagc agatatggct tagatcacaa cacccaactc ttttcaaata tgtgaaaaac      4020
     cttcccaaga aagacagcta caaataagcc cagacaatga agactacaat aagtactcac      4080
     cttttctctc tttaaatttt attttttaaa cctcatatgg tgctgcatgc ccaagatttt      4140
     aatgtccaga cactgaagaa catctactag catcaacacc atccaggaaa acatgacctc      4200
     accaagtgaa ctaaataagg cactggggac aaatcctgga gaaaaagaga tatgtgatgt      4260
     ttcagacaga gaattcaaaa tacctgtatt aaaaaaaaaa actgaaagaa atttaagata      4320
     acaaagtaaa gaaattccaa attttatcag ctaaactcaa caaagagatt gaaatagtta      4380
     cagcaaataa agcagaaatt ctgagctgaa aaatgcaatt ggcatgctga agaatgcatt      4440
     aaagccatgt aacagcagaa tggatcaagc agaagaaata gtgagcttga agacaggctc      4500
     tttgaaaata catagaagag acaaaagaaa aagaataaaa acaacaaatc atgcgaacag      4560
     gatctagaaa atagcctcac aaagacagat ctaagagtta tttgttttta aagaagatgt      4620
     agagaaagag gcagggtagg atctagaaaa taacctcaca aagacagatc taagagttat      4680
     tggttttaaa gaagatgtag agaaagaggc agggtagaaa aatttattca aagggataat      4740
     aacacagaac tttccaaacc tatagaaaga tatccatatc cacctacaaa aatgttatag      4800
     aacattaagc agatttaacc caaaaaagac gacttcaaag cattcaataa atcttccaaa      4860
     tgtcaaagat aaagaaaagt tctaaacgaa gaaagagaaa aggaacaaat aacatactgg      4920
     ggagctccaa cacgtctggc agcagacttt acagtggaaa ctctactggc caggagagag      4980
     aagcaataaa tatttaaagt attaaaggaa aaaaactttt accttagaat agaatataca      5040
     gtgaaaattt tcttcaaata aaaagaaata ctgacttttt ccgacaaaaa aaagctgaag      5100
     tattttatga ataccatacc tgtcctaaag gaatgctaaa gggagtactt caatcaggaa      5160
     gaaaaggaca ttaacgagca atgaatgatc acctaaaggt taaaaaaaaa atcctcactg      5220
     ctaatagggt acaaaacaaa acagaatatt ataacactat agctgtgtgg tgtgcaaact      5280
     actcttattc aaagtaggaa cactaatacc caatcaaaag taataactac aacaacattt      5340
     caagacatag cacaataaaa tataaataga aacaacaaaa agttacaaag ttaagggatg      5400
     agcacgaccc gtcctgagcc ggcagatgtg gtggaagctc cggagctcgg gagctcgcgg      5460
     aaggactgga gcgtgggctg aaaggaggcc gccccgagag ccggaagcct gggcagggga      5520
     cggaggcctc cggcgccccc cagcaacagc agggcggcac cacattggtc ctgcgccagg      5580
     tctggccgcc ggtgacggcg ggacgctctg ggaggccggc ggtgctcggg tgtagaggga      5640
     gacagctgcc tgggggcacc ggcgagcgcc tctgggggtc ccggatccga gacccgcggc      5700
     cccggggtgg cggtgatgcc tggagtcgtg cggacgttgc tgggccgggg tcttggggca      5760
     gccaggcacc gctgctggcg tctaggccac accaccctga aggcgcctgc tcgcctctga      5820
     tctgttgaag ctaagcaggg tcggtcctgg ttagtacttg gatgggactc cgcctggtaa      5880
     tagccggtac cgtaggcttt tggcttcccg ctctctccct ctttccccct tttgtctcgg      5940
     tccttcccaa acgccccctt gaccgccccc gcgccccagc ggaagcccag gacctcctcc      6000
     tgaagatccg ccactgcagc accgccaggc agcagcatcc cacctcttcc gactcgcggc      6060
     agccccacca ggagcccggc tccaacccgg gcaggatggg accgaccccg agggcgcagg      6120
     cgcgggttcc ctgaggtccc gggtgtcttc acgctccccg gactcccagg caattctatt      6180
     cattcatcca gcgacactgc aaccgtccaa gccgggggaa ggggcgggta ggggcagcgg      6240
     gtcccacaga ccccaggcaa gacctccgct ccagaacccg tgggctgctt tccccagggg      6300
     aaggacattg tcttcgccag ccacgaggaa atccgtccct gtgcacccgg tttcccaatg      6360
     ccaccgactt cgtgtgaact ccagtcctga ggacaggaga gagacccagg cctcccccca      6420
     tggacaagct cggcaccacg gctccctcca gacaaaggag cacactctac aaatctcagg      6480
     gcccaccgca acaaggagac agaaagaagc aaacaaagga aggaccttat gaaacgcacc      6540
     cacaaagcaa ccaaccaatt caagaaaata aaacacgtct tagggctccg ttggttttcc      6600
     cgcgtagggg gccctgaccc cctcttctag cccggcccaa acaccctcta ccccacccct      6660
     gcctgccgaa aggtgccctg tctacctgag cagagcctcc ctctccaagg ctctgttgct      6720
     gtcactctag cactccctca ccctctccct ttctctactt ccccctccac ctcgcactct      6780
     actgtggcgc tctctctaac cccctctgtc tcgcctcccc cttctctgtc tctctctctc      6840
     tatcactgtc tctctctctc ctggttctat ttctccatcg ctctctccct tgctctcctt      6900
     ctgtagcagg aggagctgca gacaaaaccc ctcagacacc gagttgtaga aggaggggtt      6960
     ttattcagct gggagcattg gcagactcac gtctccaaaa acctagctct ctgaatgagt      7020
     aattcctgtc cctcttaagg gcttacaact ctaagggggt ccgcgtgaga gggtagtgat      7080
     ggattgagga agcagagggt acgtgactgg gggctgcatg caccggtaat tagatcagaa      7140
     caaaacggga cagggatttt cacagtgctt ttctatacaa tgtctgtaat ctatagataa      7200
     cataaccgag taggtcaggg gtcgatcttt aactaccagg cccagggtat ggcgcaggtc      7260
     tgtctgcctg tggatttcat ttctgccttt ttagattttg cttcttcttt ctttggaggc      7320
     agaaattggg cataaaacaa tatgaggggt ggtgtccctt caagttatct gtgtctgtgt      7380
     ctttgtgtgt ccatgtgtgt gtgcccggga gtggtgtgtc tgtgtccgtg tgtgtgagtg      7440
     tctgcgcgcg tgcacccgtg tgtatccgtg tgtgtgtcag ggtgggtttg cttgtggtag      7500
     tggtggggtg tgtctgggtg tccgtcagcc cctctttccc gggatgaggc tgccggggct      7560
     ctagtgctgg cgcggggcaa agcagagcct tcctgccccg ttggccacgg cgggtccttg      7620
     tcggaacaag cgacgattgt gtaggcgttg taagaaaaat ggcccgcggg gctgggccgg      7680
     ctgttcaccc cggtcagccc tggcggctct gggtgtgtgg ggcaacaggg ggccttgcag      7740
     gaggggcagc aaggaatcca aaatattttt tccgcggcaa agcggaggac cggaggggac      7800
     cccaggacag tgggccctgg gccctgacgc ctcggagcac accccttcct gagcgggccc      7860
     caggtgttgg aagctctgga gctcgagagc ctggggaagg cctggagtgt cagcgagagg      7920
     gtggtcacct ggagagtcca gagccctggc aggggaggga ggcctctggc gcctaggcgg      7980
     tctcgaacgt ggtctggccg ccggcgacag cgggacgctc tgggaggtcg gcggaaagcg      8040
     cagcgcggtg actggtggtg cttgggcgta gagggggaga gcagcccggc cagaggcaag      8100
     tggctctggg gtgcctcatc ccagccttgt ggccccgggt tgctggtgac gcctggaatc      8160
     aggcgggtgt agctggactg gactcttggg ccagccaggc gccactgcca ttgtctaagg      8220
     ccacaccacc cggaaaacga gagagaccca agccgcgacc cctgggcacg ctcagcgcca      8280
     ctgctcctgc cacagtgagg ggcgcactct acaactttca gggcccacag caccaagagg      8340
     acagggagga gccaacaaag gaatgaggct acgaaacgca cccccaaagc aaccaaccaa      8400
     tccaagtaaa aacacgcctc agggctctgt tggttttccc gcgtgggcgg ccctgccccc      8460
     cctgttccgg cccgtcccag acaccctcca ccctaccctg gccaaagggg cccctgtcta      8520
     ccagatagag cctccctctc caaggctctg ttgctctccc tctctagctc cctcaccctt      8580
     tccctttctc tacttccctc tccaccttgc tctctctctc aatctccccg gttcctctgt      8640
     gtctctctct cgatcgctgt ttctctctcc ttccgtttct atctctccat ccctctgtac      8700
     cttgctctcc ttcaagctgt ctgtgtcttt ctgtgtctgt gtgtgtgctt gtgttcccgc      8760
     atgtgcaccc atgtgtgtct gtgtgtttgg gagtgggttt gctaatgatt gtggtgggtg      8820
     agtctggatg ttcatcagta ccttagtccc gggatcagga tgcgaactct attgccagcg      8880
     cgtgggtgtc acagttgctg tgatattctc atacacgcag atgtgtggat ctcgttcatt      8940
     ttcacgtaga caacgagagc gaaaccacag agaaaagaaa catcccatgc atcacggcct      9000
     gacgatggat tcctgtttcc tgcaaaatgg ggagtctcca atatagcctg tttgaaaact      9060
     ggaaaggaga gcactgacac aatgctggtc ttccacgcat tcctggaagt ttctgggacc      9120
     ccacagagca cgggaaacaa acagtcaaca tggtcacgct ttcagggggc agtaacttga      9180
     gcaacaggaa cctttgcaga gggcaaagaa acgtggaatc cagaatcacg cttcagttgg      9240
     cctaagtgtg acccctgtgt ggatgggact ttccgcctcg cgctctgttg cagggctcaa      9300
     cgtggggata tgtcatctgt gaaccacgtg gatgaaaaac acacaaccac ctgagtgtca      9360
     gctcattgcc ctctggggaa ttcgctcatt ccttcggaaa cggaattggt ctgaattgct      9420
     ccgggatgaa gtaacccagg ctggcgatcc agagggccgc tgagcgcccc gccggccaac      9480
     ggggctgtgg gcccagcact tagcccgcac tgggcaccca acattttccc ggagtgctag      9540
     gtcctgttgg ttctggaggc agaaggccgt ttttctctct gccttcgttc tctgtttctt      9600
     gctccttttg tccctcggtc catccttccc tctgttcttc cttccctacc ccagtttttt      9660
     ccccctttct ccctccctcc atctttctct cccttccggg gtccctcctt ccacccatcc      9720
     tttcctagct ccatccttcc atctcactct gtctccattc ctgtcctcat ctctgcctgc      9780
     cttccctctt gcctggaaag ggcagcacct cggtttgcat gtggtctcgg gtctacattt      9840
     agttgcaagg cattccatgg tgctggcaag gaggctggcg ggacaaaggt tggctagtga      9900
     tggagagcga agaggcagag gagtcgagcc gcagaaagaa ctggcctggc ttctgccccg      9960
     gcccagtgtt tcgcggactg aggtctccgc caaccc                                9996
//


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