EBI Dbfetch

ID   ABBA01037339; SV 1; linear; genomic DNA; WGS; HUM; 7594 BP.
AC   ABBA01037339;
PR   Project:PRJNA19621;
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
DE   Homo sapiens CTG_1103276992120, whole genome shotgun sequence.
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
RN   [1]
RC   Publication Status: Online-Only
RP   1-7594
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
RN   [2]
RP   1-7594
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
DR   MD5; 57023777561b58d960cfb9bf07a9e9d8.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270442.
DR   ENA-CON; DS486450.
DR   ENA-CON; GJ212115.
DR   ENA-CON; GJ212001.
DR   ENA-CON; GJ212127.
DR   ENA-CON; GJ212164.
DR   ENA-CON; GJ211964.
DR   BioSample; SAMN02981236.
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
FH   Key             Location/Qualifiers
FT   source          1..7594
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
SQ   Sequence 7594 BP; 1662 A; 2927 C; 392 G; 2613 T; 0 other;
     attcccctcc attccattcc actttactcc actccactcc attcaactac actccattcc        60
     acgcgacttc actccattcc actctattcc attacattat cttgcattcc actccactcc       120
     actccactcc agcccgctcc attgaattcc attccctctc actccattcc actccattcc       180
     actgcactcc acatcactcc atttgattcc gttctaccaa atttcaatcc atgccaatcc       240
     actccaccgc actccacttc aacacattcc attcgatgcc attcgatgcc attctattcc       300
     attccattcc attccattcg atcccactcc atttattcca ttccattcca ttccattcca       360
     ttccattcca ttccattcca ttcgagtcaa ttccttttca gtccatttcg ttcctgttca       420
     ttccattcaa tttccgtcca ctccactcct ttccactcaa atccaatcca ctccaataca       480
     ttccattgca ttccacccca gtcccctcct ttccactcca ctccactgtg ttcaattcca       540
     ttccttgcca ttctcttcca ttccaccccg ttccagtcca ctacccacca ctccattcat       600
     ttctgttgca ctccattcca ttccactcca atccactgca ctccactcca catcatcacg       660
     ttccattcaa ttccattcga tgctatttga ttccattcct ttcaattcca ttccattcaa       720
     ctccgtggca ttcgattcca ttccttttga ttcaattcca ttacattcca atttatttga       780
     gtccattcca ttcctgtgca ttcgattgga gttcattgca ttcgagccca ctccattcca       840
     ctccattcca tttcagtcca ttccatttga gtccattcca ctccactcca ttccactaca       900
     ttgcactcca ttccactgca ttccatttca ttccactcca ctccatacca ctcacctcct       960
     ctccattcca ttccacttca ttccactcct ttccactcca ctccactcca atccattcca      1020
     ttcctttcca ttcccctcca ttccgctcat ctcccatcca ctcaactcca ctccactgga      1080
     gtccattcca ttccactcaa caccatttat ctcctctcca ctccactcca ctctattcca      1140
     ttgcattcct ctccactcca ctccactgca ctccattcaa ttccattcct tcccattcca      1200
     ttcaatttca ctacattcta ctgcactcac tccactgcat tcaattccat tccaccccat      1260
     tccattccaa tgcattccat accaatccac tccacttcac ctcattccat ttgaatccat      1320
     ttgatgccat ttgattccat tccattcaat tccattccat tggattccat tccgttggct      1380
     agcatgccat tcgattcttc tccattccat tccgttccgt tcgattccct tccatttgag      1440
     aactttccat ttgagtccat tccattccag tccattgcat tccagtccat tccatttgag      1500
     tccattccat tccgttccat tgcattccac tccactcaac tccactgaac tccactccct      1560
     acgacttcat tccttcccat tgcattccat tccactgcat tccactccac tccactcaaa      1620
     ttcattccac cgcattccat tccactatac tccactgcac tccactccac ttcaccacat      1680
     tccattcgat tccattcgaa gccattctat tccattcttt tcaattacat tcaattcgat      1740
     agcattctat tcgatttcat tccatttgag tccattccat tggagtacat tccattccat      1800
     tccattccat tccaatcctc tggattccat tccattacat tccacttcac tcctctccac      1860
     tccattcaat tccattcctc cctattccat tccattccac tctattcctc tccactccac      1920
     acaattccac ttcattccac tgaaatctac tgcattccat cccattccat tccactccaa      1980
     tccactccac gccaatccaa tccattacac tccaccccat tccattctac tccaatccac      2040
     tccacggcaa tccagtccat tacactccac tccattccat ttcattccat tgcattacac      2100
     tccattccag tccactccac tccgttaaat tccattcctt cccattccat tccattccac      2160
     tccattccac cccactccaa tcctctccat tcaattccat tccacccctt tccattccac      2220
     tacctgccac tccaatcgtg tacaatccac tccattctat accattcctt cccattccat      2280
     tacatttcac tccattccac tcaactccac cccacttcac catattccat tcgattccat      2340
     tcaatgccat tggattccat tccatttgat tgcattccat tcgattccat ttcatccgat      2400
     tccattccat tcggttccat tccttttgaa tccattccat ccgcgtccat tccctctgag      2460
     tccattccaa tcgactccat tcctttccag tccattccat tgcagtcctt tccaatccat      2520
     tccattccat ttcaaatcac tccactccac tccactccat gccattgcac tcaattctat      2580
     tccattattt tccgtttcac tccattaaac tccactccac tccacaccac tccattccat      2640
     tccactgcat tccactccat tccattttgt agcattccat tccattcaat tccacagcat      2700
     tcaattccac ttccctacac tcaacttctt tccattccat tccattcctc tctactccac      2760
     accactccat tacaattcca ttcctctcca ttacaattcc gtttcactcc attccattcc      2820
     actccattcc actccatcca ttccacttca cctcaatcca atcgattcca ttcgatgcca      2880
     atcgattcca tgccattgtg ttccatgtca tttgattcca ctccattcca ttcctttcag      2940
     ttccattcca ttgcattcct ttctattcca ttccattcca ctccgttcaa ttccattcca      3000
     ttccattcca ctgcaatcca ttccattaca ttcaactcca ctgcactcca ttcaactcca      3060
     ttccactcca tttcactcca gtccactcca ctcaacttcc ctacattaca cttcactcca      3120
     ctacaatcca ctccagtaca ctccaatcca tgaaaatcca ttccattcca ttcctctaaa      3180
     tttcacttta ctctactcca ctccacttaa gtgcatttca tcccactcca ctcgaatcca      3240
     ctccactcca ttccactcca ttccactcaa atccgttcca ctccattcca ttccattcca      3300
     tttcattcaa ttccaccgca ttccacccca ttgcatacca ctccattcca ctccactcca      3360
     ctgcacctta ttccatttga ttccagtcga tgtcatttga ttccattcca ttcgagtcca      3420
     ttccattcca gtccattcca ttagagtcca ttccatttga gtccattccc ttcaagtcaa      3480
     ttgctttcca ttccattcca ttccacacca ttccatttca tttcactgca ttccttttca      3540
     ttccaatcca atgcactcca cttcactgca caccactcct ttcaaatcca ttccactcca      3600
     ctcccctcca atccactcca ttaaacttca cgcaactcca ctctactcca ttccattcct      3660
     ttaaattcca ctccattcct ttccactcca ttccacttca ctccttccag tccactccac      3720
     tgcactccac ttgtgtgaat tcccttctac tccactcgaa tccactatat tccactccat      3780
     tccaatccac accactaaaa tacattccac tccattcctc tccactacat tccattccat      3840
     tccattacat tcctctccac tccaatcctc tccactccac tccattccat tgcattccat      3900
     tgctctccta tctactccac tccactccat tccattccac cccattccat tccactccat      3960
     tccactccac tccacttcac cgcattccat tcgattccat tcgatgccat tcgattaaat      4020
     tccatttgat tccattttat ttgattccat tccattcgat tccattccac acgattccac      4080
     tccgtttgat tccattccat tcttttccat tcgattcctt tccattccag tacgttccat      4140
     tccattccat tccgtttcat tccattccat tccactccac tccactcaac tccattccac      4200
     tccattcaat tgcaatccag tccaatccac tccactccat tccgtccaaa ttcattcctt      4260
     ccaattaaat tccattccac tccattcaac tccactgcac tccactccat tcaattccct      4320
     ttcaccccat tcaattccac tccattccac tccattgcac tccattccac tccacttcat      4380
     ttcactgcag tccatttgat tccattagat gccatttgat tccattcctt tcgattccat      4440
     tccattcaat tccattccat tcgattccat tccattcgat tctgttccat tcgagtccat      4500
     tccattcgag tctattccat ttgagtccaa tgcattccag tccattccat ttgagtccat      4560
     tcaattccag tccaatccat tccattcgag tccattccat tccattccac ttcactacac      4620
     tccattccac ttcactacac tccattccac ttgactttgt tccattccat tcctttccat      4680
     tccactccat tccactctat tgcattgcac tccactagaa tccattctat tccattgcaa      4740
     tccatttcat tccattccat tccactccac tccactgcag tacactcgac tccagtccac      4800
     accaccccac tccactccac accactccac tccattccat tccattcctt tccattccat      4860
     tttactccac tcctctacat tccactcctt tctactctat tccatcccat tccattccat      4920
     tccactccat gccattccat tcctttccat tccattctgc tccattacac tccactccaa      4980
     tccactgcaa tccactcccc tccactccat tccattccat tccattccat tccattccat      5040
     ttcattccat tgcattccat tccactctat tccactccac ttcactctgt tcaattccat      5100
     tcctacccat tccattccat ttcactctat tccaatccac tccactccaa ttcacagcat      5160
     tgtatgtgat tccattcaat gccattcgat tccataccat tcgattccat tgtatttgat      5220
     tccattccat tcaattccac tatatttgat tccatacctt tctattacat tcccttacat      5280
     tccattccat gtgtgtccat tcctttacag tccattacat tccagtccat tccattcgag      5340
     tccactcaat ttaagtacat tccattccat tccttgccat taatttccag tccattctat      5400
     tcatttccac tcaattttac tccactcctt ttcattccat tcctgtctgt tccattccat      5460
     tccattccac tccattaaac tccactccac tctactccac tccactgcag tccactctac      5520
     tctggtcaat tccattcttt cccaatacat tccattccac ctccattcca atgaccacca      5580
     ctccagtcca ttcaattcca ttccaatcca ttccattcca ctccattctc ctccactcct      5640
     ctccaattca ttgcattcta tttgactcaa ttagatgcca tttgattcca ttccattcgt      5700
     ttccacttca ctcgatttga ttccgttaca tttcattcga ttccattcca ttccatccaa      5760
     ttccattcca tttgaggcca ttcgattcaa gtccattcca ttcgagtcca ttccttgcta      5820
     ttccatttcc atcctgtaaa ttctattcga ttcgattcga ttccattcca ttccactcct      5880
     ctcttttcca ttccactcca ctccattcca ctctattcca ttccactcca ctcaactcct      5940
     ctccactcca ctcgaatcca caacaaccca ttccattcca ttccactgca tactactcca      6000
     ctccactccc ctcacctcca ctccaatcca ttcaattcca ttccttgcca ttccattcca      6060
     ctccactcca ctccacttca ttccactcta ttccactcta ttccattcca ttccattcca      6120
     ctctattcca ttccattcca ttccattcca ttccattcca ttccattcca tagcattctt      6180
     tccactcctt tccactccac tctgttaaat tacatttctt cccattccat tgcattccac      6240
     tccattccaa tccaccccac tccactccaa tcaattccaa tccattccac tccattccat      6300
     tccactccat tccattccat ccccttccac tccattccac tccattccac tccactccag      6360
     tacagtgcat tccatttcat ttcattccat ttcattcaat tcaattccac tccatttcat      6420
     tccatacatt tcaattccat ttcaatatat tcctctccac tccactccat tccattctgt      6480
     tcctttgcat tccacttacc tggtctccat tcccatccat tcaattccat tccaccccat      6540
     ttcttgccac tactttccac tccctccact tgtttccatt tgattcaatt cgaagccatt      6600
     ccatgcaact cctcttttca attgatccat tcgatgccat tcgttgccat tccatttgat      6660
     tccatttcac tcaaatcaat tccatttgat tccattccat tcgattccat ttcatacgag      6720
     tctgttccat tcggggacat tccattcaag tccattccat tcgagtgcat tcctttctag      6780
     tccattctat tcctgtccat aacattcgag taaattccat tccattccat tccattccac      6840
     tccattccaa tccattctat tccattccat tgcattccac tgcattccac tccactccac      6900
     cgcattccac tccactctgt tcaattccat tcaatacaat tctgtttcat ttcactccat      6960
     tcccctccac tccactacat tctattgcat tccactccac tccactacat ttcacttcat      7020
     tccattccac tccactccac tccaatccat tccactccac tccactccac atctctccac      7080
     tccactctat tccaatcaat tccactattt ccaccccatt acatttaact ccactccatc      7140
     ccattccatt ccaatccact ggattccatt ctttgcatat tactccattc cactccactc      7200
     aactcaactc ggttcaattc tattccttac cattccattc tattcaaatc cattcgacac      7260
     cactcccctc tactgcattc attacattgc agcccattcc attccaatcc attccactcg      7320
     actccactcc acctcatcgc attccactgt attccctttg atgccattct attccattcc      7380
     attcgactcc attccattct attccattcc attctagtcc attccatgcg agtcccttct      7440
     attatattcc attccattcg agtccattac atgggagttc attcctttcg agtccattca      7500
     attcaaatcc attccattca agtccattct attccagtcc attccattgc cagtccactc      7560
     ccttcgagtg ccttccatcg agtccattac attc                                  7594