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EBI Dbfetch

ID   ABBA01037335; SV 1; linear; genomic DNA; WGS; HUM; 1104 BP.
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AC   ABBA01037335;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276825926, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1104
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1104
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 6609950dd787abc7a6199cba3c12f81a.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270442.
DR   ENA-CON; DS486450.
DR   ENA-CON; GJ212115.
DR   ENA-CON; GJ212001.
DR   ENA-CON; GJ212127.
DR   ENA-CON; GJ212164.
DR   ENA-CON; GJ211964.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01037335.1:1-1104; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1104
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1104 BP; 236 A; 347 C; 74 G; 447 T; 0 other;
     cattccactc cattccacta cacttgactc cactccattc aattccattt cacaccatta        60
     cattccactc caaaccactg tgcttcaccg ctttccattt gattgcattc aattccattt       120
     gatttcattc catttaattc gattccattt gattccatac cattcgattc cattccattc       180
     cattcgattc cataccattc gattccattc cattccattc gattccattc cattcgattc       240
     cattccattc cattcgattc cattccattc atttccattc cattccagtc cttttctttc       300
     tattccattc cgttccattc cattccattc cattaatttc cattccgttg cattgcattc       360
     cattccattc catccaatta aattccatta cattcgattc tcttccattc gcttccatta       420
     catttgatac cattccattc gtctgcattt ctttcgattc cgttgtattc aatacccttc       480
     cattccattc cattgcattc cattccattc cgttccattc cattgcattc cattccattc       540
     cattccattc cgtttctttc cattctagaa aggaaaagaa tttcattctt ttctatttca       600
     ttcgattcca ttcatttcca gtccattcca ttgcaatcca ttccattcac gtccattcta       660
     ttccactcca ttccattcca gttcattcca ttctgttgca ttccattcaa ttccattcca       720
     ctcgattcca ttcccttcgc atccattcct ttcgagtcca ttccattcga gtccattcca       780
     ttccaggcca tttcatttga ttccattaca ttcgattcca atccatttga tcccattctg       840
     ttcgattctg tactgttcga gctcattcca ttcgattcca atccatttga ttccattcca       900
     ttccattaca ttatgttcga tttcattcca ttcgattcca ttccattcga ttccattata       960
     ttggaatcca ttcttttcca tttgattcta ttccaatccc attacattac attacatttc      1020
     attccattcc attacattcc ttttgagtcc attccatttc ctgtccattc cattcaagtc      1080
     tattccattc cacgccattc catt                                             1104
//


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