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EBI Dbfetch

ID   ABBA01020713; SV 1; linear; genomic DNA; WGS; HUM; 2342 BP.
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AC   ABBA01020713;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276887604, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2342
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2342
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 2841c6f3ea00380ad04fa95c31942561.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2342
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2342 BP; 749 A; 479 C; 359 G; 755 T; 0 other;
     tttttcacat aagcctcaat gctttccaaa atatcccttt gcagattctg caaaaacagt        60
     gtttccaaac tgctgaatga aatgtttctc tgtggatgaa tgcacacatc acaaagaggt       120
     ttctcagaga gcttccttct agtttttata ccatgatatt ctcttttttg gccttaataa       180
     gttcccaaaa gtccatttgc agaatggaca aaaacagtgt ttccaatctg ctgaatcaaa       240
     ataaagcttt aactctggga gattaatgca cacatcacaa agtagtttct cagaaagcta       300
     ctttctagtt ttcatctgaa gatgtttaga ttttcaccaa agacctcaaa gctctcagaa       360
     atatcccttt gcagattcta caaaaacagt gtttccaatc tgctgaatcc aaagaaagga       420
     ttaactctgg gagttgaatg cacacatcac atagcagttt ctcagatatc ttctgtctac       480
     tttttgtcct gaaatattca ctttttcctc attgtcctca gtgagtttcc aaatgtccat       540
     ccacagaatg gacaagaaca gtgtttccaa accagtgaat gaaaagagaa agtttaactc       600
     tgtgagatga atgcacacat cacaaagcag tctctcagat ggcttccttt cagtttttat       660
     cctgtaatat tcatttttca ccattggcct caatgagctt ccaaatgtcc attcatagca       720
     tggacacaaa cagtgtttcc aaatattgaa tccgaagaca ggtttaactg tctgagatga       780
     atgcagacat cacaaatcag ttacacagaa atcttctttc tagattttat ctgaagatgt       840
     taccttttct accatagacc tcaatgctct ctgaactata cctttgcaga ttgtacaaaa       900
     acagtgttgc caaactgctg aatccaaagg aaggtttcat tccatgacat gaatgcacgt       960
     atcagaaagc agtttctcag aaagcttctt tctagttttt atctgaagat ttttctttta      1020
     caccacaagc ctcaaggtta tccaaaatat ctctttgcag attctacaga aacagtgttt      1080
     ccaaactgct gaatgaaaag aaaaatttaa ctctgcaata tgaatgcaca catcacatag      1140
     cagtttctca gaaagctctt gtctacttta taccctggga tattcacttt ttcaccattg      1200
     gcctcaagga gctcccaaat gttcatttgc agaatggaaa aaaatcagtg cttctaaatg      1260
     gctgagtcca aataaagttt taactctgtg agacgaatac acataaaaaa gcagatacaa      1320
     agaaagcttc tctcttgttt ttatctgaag atgtttcatt taaccatagg catcaatgtt      1380
     ctctgaaata tccctttgca gattctacaa aaacagtttt accaaactgc tgaatgaaaa      1440
     gaaaggttta attctatgag atgaaaacat atatcataaa gaggtttctt ataaggcatc      1500
     tctctagttt ttatgtgaag ttatttcctt tttcaccata ggtttcaatg tctccgaaat      1560
     atacttttgc agattctaga aaaacactgt ttccaaactg ctgtatgaag agaaatactt      1620
     acctctgtgg gataaatgca caaataacaa acctgtttct cagatagctt ccttcttgtt      1680
     ttgttcctgg gatatttcct tttttgcaat tccttcaatg aactcccaaa tttccattca      1740
     cagaatggac aaaaacagtg tttccaaatt gctgaatcca aagaaaattt taacgctttg      1800
     agatgaatgc acacatcaca aatcggtttc tcagatagct tccttttagt ttttatcatg      1860
     ggatacttgt ttttttgcca ttggcctcaa cgagctccca aatatccaat cacagaatgg      1920
     acaaaaacag tgtttccaaa ttgctgaatc caaagaaaat tttaacgctt tgagatgaat      1980
     gcacacatca caaatcggtt tctcagatag cttcctttta gtttttatca tgggatactt      2040
     gtttttttgc cattggcctc aacgagctcc caaatatgca atcacagaat ggacaaaaac      2100
     agtgtttcca aactgctgaa tccaaggata tgtttaactc tgtgagatgt acgcacacat      2160
     gacagagcag tttctcagaa agattctttc tagtttttat ctgaagatgt ctcctttttc      2220
     aacattagcc ttaatgctct ccaaaatatc cctttgtaga ttctacaaaa gcaatctttg      2280
     caaactgctg aatgaaaaga aagatttatc tctgtgtgat aaaagcacac ataacatagc      2340
     at                                                                     2342
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