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EBI Dbfetch

ID   ABBA01020705; SV 1; linear; genomic DNA; WGS; HUM; 2578 BP.
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AC   ABBA01020705;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276995101, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2578
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2578
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 9fa047d87a8e3aab708c2c43a1356ae3.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2578
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2578 BP; 879 A; 505 C; 469 G; 725 T; 0 other;
     aaatctgcac ttgcaaattc caagaacaga gtgtttgaaa tctgctctct ctaaaggagg        60
     ttcaaatctg tgagttgaat acaaacaaca caaagaagtt aatgagaatt cttctgtcta       120
     gcactatatg tggaaatccc gtttccaaca aagggctcaa agagggccaa ttatccactt       180
     gcagacttta caaagagtgt atttccaaac tgctcgatta aagaaaggtt aaactctgtg       240
     agttgaacac acacatcaca aagtgttttc tgagaatgat tttgtctagt tttaatacga       300
     agatatatcc ttttctatca ttgtcttcca agcgtttgaa atctgcacta gcaaattcca       360
     gaaaaagagt gtttcaaatc tgctctctct caagaaaggt tcaactctgt gagtggaata       420
     cacacaacac aaagaagtta ctgagaattc ttctgtctag cgttatatga agaaatcccg       480
     tttccaagga aggcctcaaa gaggtccaaa tatccacttg ccgactttac aaatagagtg       540
     tttccaaact gctgtatgaa aagaatggtt aaactctgtg agttgaaggc acacatcaca       600
     aaccagtttc tgcgaatgac tctgtgtagt tttaatacga agatatttcc atgtctaaga       660
     ttggcgtcaa atcgcttgaa atctccactg gcaaattcca caaagagtgt ttccaaactg       720
     ctctgaataa aggaaggttc aactctgtga gttgaataca cacaacacaa aggatttact       780
     gaggattctt ctgtctagca gtaagtgaaa aaatcaagct tccaacgaag gcctccaagg       840
     aatccaagta ttgacttgca gactttacag acagagtctt tccaaactgc tgtatgaaaa       900
     gaaaggtgaa actctgtgag ttgaacgcac acataacaaa gcagtttctg agaatgattc       960
     tgtgtagttt ttacacgaag atatttccat ttcaaagatt ggcgtcaaat tgcttgaaat      1020
     ctccacttgc aaattccaca gaaagagttt ttcaaaacta ctcggtctaa aggaagtttc      1080
     cactctgtga cttgaatacc acaacacaaa gaagtgactg agaattcttc tgtctagcat      1140
     tatatgaaga aatcccgttt ccaatgaagg cctcaaagaa gtccaaataa gcacctgcag      1200
     actttacaaa cagagtgttt ccaaactgct ctatgaaaag aaaggttaaa ctgtgtgagt      1260
     tgaacgcaca catcacaaag tagtttttga gaacgattct gtgtagtttt tatacgacga      1320
     tattcccttt tctgccatag gcctagaagc gcttgaaatg tgcacttgca aattccaaaa      1380
     aaagagtgtt tgaaatctgc tctctctaaa ggaaggttca aatctgtgag ttgaatacaa      1440
     ccaacacaaa gaaattactg agaattcttc tgtctagcac tatatgagga aatcccgttt      1500
     ccaaagaagg tctcaaagag ggacaattat ccacttgcag actttacaaa gagggtattt      1560
     ccaaactgct cgattaaaga aaggttaaac tctgtgagtt gaacacacac atcacaaagt      1620
     gttttctgag aatgattttg tctagtttta atacgaagtt atatccttgt ctatcattgt      1680
     cttcgaagcg tttgaaatct gcactagcaa attccacaaa aagagtgttt caaatctgat      1740
     ctctctaaag aaaggttcaa ctctgtgagt tgaatacaca caacacaaag aagttactga      1800
     gaattcttct gtctagcgtt atatgaagaa atcccgtttc caatgaaggc ctcaaagagg      1860
     tcgaaatatc cacttgcaga ctttacaaat agagtgtttc caaactgctc tatgaaaaga      1920
     aagttaaatt ctgtgaattg aaggcacaca tcacaatcta gtttctgcga atgactctgg      1980
     gtactttaaa tacgaagata tttccacgtc taagattggt gtgaaatctc ttcaaatgtc      2040
     cacttgcaaa ttccacaaaa agagtgtttc aaaactgctc tgaataaagg aaagttcaac      2100
     tctgtgagtt gaatacacac aacacaaagg atttactgag aattcttctg tctagcagta      2160
     aatgaaaaaa tcccgcttcc aacgaaggcc tcaaaggggt ccaagtattc acttgcagac      2220
     tttacagaca gagtctttcc aaactgctgt atgaaaagaa aggtgaaact ctgtgagttg      2280
     aacgcacaca taacaaagca gtttctgaga atgattctgt gtagttttta cacgaagata      2340
     tttccatttc aaagattggc cacaaattgc ttgaaatctc cacttgcaaa ttccacagaa      2400
     agagtttttc aaaactactc ggtctaaagg aagtttcaac tctgcgactt gaataccaca      2460
     acacaaagaa gtgactgtga attcttctgt ctagcattat atgaagaaat cccgtttcca      2520
     actaaggcct caaagaagtc caaataagca cctgcagact ttacaaacag ggtgtttc        2578
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