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EBI Dbfetch

ID   ABBA01020704; SV 1; linear; genomic DNA; WGS; HUM; 1377 BP.
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AC   ABBA01020704;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276823785, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1377
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1377
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; c94f6d8d339a97bedaf28854abdc2f1e.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01020704.1:1-1377; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1377
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1377 BP; 393 A; 245 C; 268 G; 471 T; 0 other;
     atagaaaagg atatatcttc gatattaaaa ctagacaaaa tcattctcag aaaacacttt        60
     gtgatgtgtg tgttcaactc acagagttta acctttcttt aatcgagcag tttggaaata       120
     cactctttgt aaagtctgca agtggataat tggccctctt tgagcccttc gttggaaacg       180
     ggatttcctc ttataatgct agacagaaga attctcatta acttctttgt gttgtttgta       240
     ttcaactcac agatttgaac cttcctttag agagagcaga tttcaaacac tctttttttg       300
     gaatttgcaa gtgcagattt caagcgcttc taggcctatg gcagaaaagg gaatatcgtc       360
     gtatgaaaac tacacagaat cattctcaaa aactactttg tgatgtgcgc gttcaactca       420
     cagagtttaa gctttctttt catagagcag tttggaaaca ctctgtttgt aaagtctgca       480
     ggtgcttatt tggacttctt tgaggccttc gttggaaacg ggatttcttc atataatgct       540
     agacagaaga attctcagtc acttctttgt gttgtgtgta ttcaagtcac agagttgaac       600
     cttcctttag acagagtagt tttgaaaaac tctttctgtg gaatttgcaa gtggagattt       660
     caagcgattt gaggccaatc tttgtaatgg aaacatcttc gtataaaaac tacacagaat       720
     cattctcaga aactgctttg ttatgtgtgc gttcaactca cagagtttca cctttccttt       780
     catagagcag tttggaaaga ctctgtctgt aaactctgca agtgaatact tggacccctt       840
     tgaggacttc gttggaagct tcattttttc acttactgct agacagaaga attctcagta       900
     aatcctttgt gttatgtgta ttcaactcac agagttgaac cttcctttat tcagagcagt       960
     tttgaaacac tctttttgtg gaatttgcaa gtggagattt caagcgattt gacgccaatt      1020
     tagacatgga aatatcttcg tattaaaagt acacagagtc attcgcagaa actagtttgt      1080
     gatgtgtgag ttcaattcac agagtttaat ctttcttttc atagagcagt ttggaaacac      1140
     tctatttgta aagtctgcaa gtggatattt ggacctcttt gacgccttct ttggaaacgg      1200
     gatttcttcg tataacgcta gacagaagaa ttctcagtaa cttctttgtg ttgtgtgtat      1260
     tcaactcaca gagttgaacc tttctctaga gagagcagat ttgaaacact ctttttgtgg      1320
     aatttgctag tgcagatttc aaacgcttcg aagacaatga tagaaaagga tatatct         1377
//


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