Dbfetch

ID   ABBA01020703; SV 1; linear; genomic DNA; WGS; HUM; 3867 BP.
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AC   ABBA01020703;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276995100, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3867
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3867
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 7f416c75789b4a6bcaf5090739dedfca.
DR   ENA; ABBA01000000; SET.
DR   ENA; ABBA00000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01020703.1:1-3867; homo_sapiens.
DR   PubMed; 17803354.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3867
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3867 BP; 1367 A; 738 C; 717 G; 1045 T; 0 other;
     attgacaatg agatcacatg gacacaggaa ggggaatatc acactctggg gactgtggtg        60
     gggttggggg aggggagagg gatagtattg ggagatatac ctaatgctag atgacacatt       120
     agtgggtgca gcgcaccagc atggcacatg tatacatagg taactaacct gcacaatgtg       180
     cacatgtacc ctaaaactta gagtataata aaaaaaataa aataaataaa aaaaaaatga       240
     taaaaaaaaa aaaagtttta gttgtggctg gtaaaccaca aagtttgtag ttcaaaaagc       300
     aggaaaacag ttccttgtga aggttccccc aggagattgt tgtttctaac agaaaattaa       360
     atactgacct ggagcaccaa aaaaaaaaaa aaaaaaaatg aatggtgaca aaggccagag       420
     atcttcaagc ataattaaaa tgacatgagc tagaaaaaaa aaaaaaaaag aaaagaaagg       480
     tggaactctg tgagctgaac gcacacataa caaagcagtt tctgagaatg attctgtgta       540
     gtttttacac gaagatgttt ccatttcaat ggttggcctc aaattgcttg aaatctccac       600
     ttgcaaattc cacagaaaga gtttttcaaa actgctctgt ctaaaggaag gttcaactct       660
     gtgacttgaa tacacacaac acaaagaagt gactgagaat tcttctgtct agcattatat       720
     gaagaaatcc cgtttccaac gaaggcctca aagaagtcca aataagcacc tgcagactta       780
     caaacagagt gtttccaaac tgctctatga aaagaaaggt taaactctgt gagttgaacg       840
     cgcacatcac aaagtagttt ttgagaatga ttctgtgtag tttttatacg aagatattcc       900
     cttttctgcc atacgcctag aagagcttga aacctgcact tgcaaattcc aaaaaaagag       960
     tgtttgcaat ctgccctctc taaaggaagg ttcaaatctg tgctttgaat acaaacaaca      1020
     caaagaagtt actgagaatt cttctgtcta gcactatatg aggaaatccc gtttccaacg      1080
     aagggctcaa agagggccaa ttatccacct gcagacttac aaagagtgta tttccaaact      1140
     gctcaattaa agaaaggtta aactctatga gttgaacaca cacatcacaa agtgttttct      1200
     gagaatgatt ttgtctagtt ttaatacgaa gatatatcct tttctatcat tgtcttcgaa      1260
     gcgtttgaaa tctgcactag caaattccac aaaaagagtg tttcaaatct gctctctcta      1320
     gagaaaggtt caactctgtg agttgaatac acacaacaca aagaagttac tgagaattct      1380
     tctgtctagc gttatacgaa gaaatcccgt ttccaaagaa ggcgtcaaag aggtccaaat      1440
     atccacttgc agactttaca aatagagtgt ttccaaactg ctctatgaaa agaaagatta      1500
     aactctgtga attgaactca cacatcacaa actagtttct gcgaatgact ctgtgtactt      1560
     ttaatacgaa gatatttcca tgtctaaatt ggcgtcaaat cgcttgaaat ctccacttgc      1620
     aaattccaca aaaagagtgt ttcaaaactg ctctgaataa aggaaggttc aactctgtga      1680
     gttgaataca cataacacaa aggatttact gagaattctt ctgtctagca gtaagtgaaa      1740
     aaatgaagct tccaacgaag tcctcaaagg aatccaagta ttgacttgca gactttacag      1800
     acagagtctt tccaaactgc tgtatgaaaa gaaaggtgaa actctgtgag ttgaacgcac      1860
     acataacaaa gcagtttctg agaatgattc tgtgtagttt ttacacgaag atatttccat      1920
     ttcaaagatt ggcctcaaat tgcttgaaat ctccacttgc aaattccaca gaaagagttt      1980
     ttcaaaacta ctcggtctaa aggaagtttc cactctgtga cttgaatacc aaaacacaaa      2040
     gaagtgactg agaattcttc tgtctagcat tatatgaaga aatcccgttt ccaacgaagg      2100
     cctcaaagaa gtccaaataa gcacctgcag actttacaaa cagagtgttt ccaaactgct      2160
     ctatgaaaac aaaggttaaa ccctgtgagt tgaacgcgca catcacaaag tagtttttga      2220
     gaatgatact gtgtagtttt tatacgaaga tattcccttt tctgccatag gcctagaagc      2280
     gcttgaaatc agcacttgca aattccaaaa aaagagtgtt tgaaatctgc tctctctaat      2340
     ggaagtatca aatctgtgag ttgaatacaa acaacacaaa gaagttattg agaattcttc      2400
     tgtctagcac tatatgagga aatcccgttt ccaacgaagg gctcaaagag ggccaattat      2460
     ccacttgcag actttacaaa gagtgtattt ccaaactgct cgattaaaga aaggttaaac      2520
     tctgtgagtt gaacacacac atcacaaaga gttttctgag aatggttttg tctagtttta      2580
     atatgaagat atatcctttt ctatcattgt cttcgaagcg tttgaaatct gcactagcaa      2640
     attccacaaa atgagtgttt cagatctgct ctctccaaag aaaggttcaa ctctgtgagt      2700
     tgaatacaca caacacaaag aagttactga gaattcttct gtctagtgtt atatgaagaa      2760
     atcccgtttc caatgaaggc ctcaaagagg tcgaaatatc cacttgcaga ctttacaaat      2820
     agagtgtttc caaactgctc tatgaaaaga aagttaaact ctgtgaattg aaggcacaca      2880
     tcacaatcta gtttctgcga atgactctgt gtactttaaa tacgaagata tttccatgtc      2940
     taagattggc gtgaattcgc ttgaaatctc cacttgcaaa ttccacaaaa agagtgtttc      3000
     aaaactgctc tgaataaagg aaggttcaac tctgtgagtt gaatacacac aacacaaagg      3060
     atttactgag aattcttctg tctagcagta aatgaaaaaa tcccgcttcc aacgaagtcc      3120
     tcaaaggggg ccaagtaatc acttgcagac tttacagaca gagtctttcc aaagtgctct      3180
     atgaaaagaa aggtggaact ctgtgagctg aacgcacaca taacaaagca gtttctgaga      3240
     atgattctgt gtagttttta cacgaagata tttccatttc aaagattagc ctcaaatcgc      3300
     ttgaaatctc cacttgcaaa ttacacagaa agagtttttc aaaactgctc tgtctaaagg      3360
     aaggttcaac tctgtgactt gaatacacac aacacaaaga agtgactgag aattcttctg      3420
     tctagcatta tatgaagaaa tcccgtttcc aacgaaggcc tcaaagaagt ccaaataagc      3480
     acctgcagac ttacaaacag agtgtttcca aactgctcta tgaaaagaaa ggttaaactc      3540
     tgtgagttga acgcgcacat cacaaagtag tttttgagaa tgattctgtg tagtttttat      3600
     acgaagatat tcccttttct gccatacgcc tagaagagct tgaaacctgc acttgcaaat      3660
     tccaaaaaaa gagtgtttgc aatctgccct ctctaaagga aggttcaaat ctgtgcgttg      3720
     aatacaaaca acacaaagaa gttactgaga attcttctgt ctagcactat atgaggaaat      3780
     cccgtttcca acgaagggct caaagagggc caattatcca cctgcagact tacaaagagt      3840
     gtatttccaa actgctcaat taaagaa                                          3867
//