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EBI Dbfetch

ID   ABBA01020702; SV 1; linear; genomic DNA; WGS; HUM; 1342 BP.
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AC   ABBA01020702;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276995099, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1342
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1342
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 8e01fc79d118f0d6f4ea7905c3500b4d.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01020702.1:1-1342; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1342
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1342 BP; 515 A; 305 C; 234 G; 288 T; 0 other;
     tcgacacata cactctccca agactaaacc aggaagaagt tgaatctctg aatagaccaa        60
     taacaggctc tgaaattgtg gcaataatca atagtttacc aaccaaaaag agtccaggac       120
     cagatggatt cacagccgaa ttctaccaga ggtacaagga ggaactggta ccattccttc       180
     tgaaactatt ccaatcaata gaaaaagagg gaatcctccc taactcattt tatgaggcca       240
     gcatcattct gataccaaag ccaggcagag acacaaccaa aaaagagaat tttagaccaa       300
     tatccttgat gaacattgat gcaaaaatcc tcaataaaat actggcaaac cgaatccagc       360
     agcacatcaa aaagcttatc caccatgatc aagtgggctt catccctggg atgcaaggct       420
     ggttcaatat acgcaaatca ataaatgtaa tccagcatat aaacagagcc aaagacaaaa       480
     acctcatgat tatctcaata gatgcagaaa aggcctttga caaaattcaa caacccttca       540
     tgctaaaaac tctcaataaa ttaggtattg atgggacgta tttcaaaata ataagagcta       600
     tctatgacaa acccacagcc aatatcatac tgaatgggca aaaactggaa gcattccctt       660
     tgaaaactgg cacaagacag ggatgccctc tctcaccgct cctattcaac atagtgttgg       720
     aagttctggc cagggcaatc aggcaggaga aggaaataaa gggtattcaa ttaggaaaag       780
     aggaagtcaa attgtccctg tttgcagacg acatgattgt ttatctagaa aaccccatcg       840
     tctcagccca aaatctcctt aagctgataa gcaacttcag caaagtctca ggatacaaaa       900
     tcaatgtaca aaaatcacaa gcattcttat acaccaacaa cagacaaaca gagagccaaa       960
     tcatgggtga actcccattc acaattgctt caaagagaat aaaataccta ggaatccaac      1020
     ttacaaggga tgtgaaggac ctcttcaagg agaactacaa accactgctc aaggaaataa      1080
     aagaggacac aaacaaatgg aagaacattc catgctcatg ggtaggaaga atcaatatcg      1140
     tgaaaatggc catactgccc aaggtaattt acagattcaa tgccatcccc atcaagctac      1200
     caatgacttt cttcacagaa ttgggaaaaa ctactttaag gttcatatgg aaccaaaaag      1260
     agcccgcatt gccagtcaat cctaagccaa agacaaagct ggagcatcac atacctgact      1320
     tcaactatac tacaaggcta ca                                               1342
//


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