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EBI Dbfetch

ID   ABBA01020701; SV 1; linear; genomic DNA; WGS; HUM; 5738 BP.
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AC   ABBA01020701;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276777704, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-5738
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-5738
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 3ae65bb521bdf333b4b76e6f06dd2697.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..5738
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 5738 BP; 1877 A; 1201 C; 1125 G; 1535 T; 0 other;
     aactctgtga gttgaataca cacaacacaa aggatttaat gggaattctt ctgtctagca        60
     gtaaatgaga aatcccgctt ccaacgaagg cctcaaaggg gtctaactaa tcacttgcag       120
     actttacaga cagtctttcc aaactgctct atgaagagaa aggtgaaact cagtgaactg       180
     aacgcacaga taacaaagca gtttctgaga atgattctgt atagttttta cacgaagata       240
     tttccatttc aaagattagc ctcaaatccc ttgaaatctc cacttgcaaa ttccagagaa       300
     agaaattttc aaaactgctt tgtctaaagg aaggttcaac tctgtgactt gaataaacac       360
     aacacaaaga agtgactgag aatgcttctg tctagcatta tatgaagaaa tcccgtttcc       420
     aacgaaggtc tcaatgaagt ccaaaaaaac acctgcagac tttacaaagt gtttccaaac       480
     tgctctatga aaagaaaggt taaactctgt gagttgaagg cacacatcac aaactagttt       540
     ctacgaatga ctctgtgtac ttttaatatg aagatatttc catgtctaag attggcgtca       600
     aatcgcttga aatctccact tgcaaattcc acaataagtg ttttttcaaa acctctctga       660
     ataaaggaag gttcaactct gtgagttgaa tacacacaac acaaaggatt tactgagaat       720
     tcttctgtct agcagtaaat gagaaatccc gcttcaaacg aaggcctcaa aggggtctaa       780
     gtaatcactt gcagacttta cagacagagt ctttccaaac tgctctatga agagaaaggt       840
     ggaactctgt gaactgaatg cacagataac aaagcagttt ctgagaatga ttctgtgtag       900
     tttttacacg aagatatttc catttcaaag attagcctca aattgcttga aatctccact       960
     tgcaaattcc acagacagaa tttttcaaga ctgctctgtc taaaggacgg ttcaactctg      1020
     tgacttgaat acacacaaca caaagaagtg actgagaatt cttctgtcta gcattatgtg      1080
     aagaaatccc gtttccaacg aaggcctcaa tgaagtccaa aaaagcactt gcaggcttta      1140
     caaacagagt atttccaaac tgctctatga aaagaaaggt taaactctgt gagttgaacg      1200
     cacacatcac aaagaagttg ttgagaatga ttctgtgtag tttttatacg aagatatttc      1260
     cttttctgcc ataggccaag aagcgcttga aatctgtact tgcaaattcc aaaaacagag      1320
     tgtttcaaat ctgctctctc taaaggaagg ttcaaatctg tgcgttgaat acaaacaaca      1380
     caaagaagtt actgagaatt cttctgtcta gcattatatg aggaaatccc ttttccaacg      1440
     aagggctcaa agagggacaa ttctcgactt tcacatttac aaagagtgta tttccaaact      1500
     gctccattaa agaaaggtta aactctgtga gttgaacaca cacatcacaa agtgttttct      1560
     gagaatgatt ttgtctagtt ttaatatgaa gatatatcct tttctatcac tatcttcgaa      1620
     gcctttgata tctgcactag caaattccac aaaaagagtg tttcaaatct gctctctcta      1680
     aagaaaggtt caactctgtg agttgaatac acacaacaca aagaagttac tgtgaattct      1740
     tctgtgtagc gttataagaa gaaatcccgt ttccaacgaa ggcgtcaaag aagtccaaat      1800
     atccacttgc agactttaca aatagagtgt ttccaaactg ctctatgaaa acaaaggtta      1860
     aacactgtga gttgaaggca cacatcacaa actagtttct gcgaatgact ctgtgtactt      1920
     ttaatatgaa gaaatttcca tgtctaagat tggcgtcaaa tcgcttgaaa tctccacttg      1980
     caaattccac aaaaagtgtt tttcaaaact tctctgaata aaggaaggtt caactctgtg      2040
     agttgaatac acacaacaca aaggatttac tgagaactct tctgtctagc agtaaatgag      2100
     aaatcccgct tccaaagaag gcctcaaagg ggtctaacta atcacttgca gactttacag      2160
     acagagtctt tccaaactgc tctatgaaga gaaaggtgaa actctgtgag ctcaacgcac      2220
     agataacaaa gcaatttctg agaatgattc tgtgtagttt ttacacgaag atatttccat      2280
     ttcaaagatt agcctcaaat cgtttgaaat ctccacttgc aaattccaca gaaagagttt      2340
     ttcaaaactg ctcggtctaa aggaagtttc aactctgtga cttgaatacc tcaacacaaa      2400
     gaagtgactg agaattcttc tgtctagtag tatgtgaaga aatcccgttt ccaacgaagg      2460
     cctcaaagaa gtccaaataa gcacctgcag actttacaaa cagagtgttt ccaaactgct      2520
     ctatgaaaag aaaggttaaa ctctgtgagt tcaacgcaca catcacaaag tagttgttga      2580
     gaaggattcc gtgtagtttt tatacgaaga tatttccttt tctgccatag gcctagaagc      2640
     gcttgaaatc tgcacttgca aattccaaga acagagtgtt tcaaatctgc tctctctaaa      2700
     gaacgttcaa atctgtgagt tgaatacaaa caacacaaag aagttactga gaattcttct      2760
     gtctagcatt atatgaggaa atcccgtttc taacgaaggg ctcaaagagg gccaattgtc      2820
     cacttgcaga cttacaaaga gtgtatttcc aaactgctca ataaaagaaa ggttaaactc      2880
     tgtgagttga acacacacat cacaaagtgt tttctgagaa tgattttgtc tagttttaat      2940
     atgaagttat atccttttct atcattgtct tcgaagcgta tgaaatctgc actagcaaat      3000
     tccacaaata gagtgtttca aatctgcttt ctctcaagaa aggttcaact ctgtgagttg      3060
     aatacacaca acacaaagaa gttagtgaga attcttctgt ctagcgttat atgaagaaat      3120
     cccgtttcca aagaagccgt caaagaggtc caaatatcca cttgcagact ttgcaaatag      3180
     agggtttcca aactgctcta tgaaaagaaa gcttaaactc tgtgagttga aggcacacat      3240
     cacaaactag tttctgcgaa tgactctgtg tagttttaat atgaagatat tttcatgtct      3300
     aagattggcg tcaaatcgct tgaaatctcc acttgcaaat tccacaaaaa gtgtttttca      3360
     aaacttctct gaataaagga aggttcaact ctgtgagttg aatacacata acaaaaagga      3420
     tttactgaga attcttctgt ctagcagtaa gtgaaaaaat cccggttcca acgaaggcct      3480
     caaaggggtc caagtattca cttgcagact ttacagacag agtctttcca aactgctcta      3540
     tgaaaagaaa ggtgaaactc tgtgagttga acgcacacat aacaaagcag tttctgagag      3600
     tgattctgtg tagtttttac acgaagatat ttccatttca aagattggct tcaaatcgca      3660
     tgaaatcacc acttgcaaaa tccacagaaa gagtttttca aaactgctct gtctaaagga      3720
     aggttcaact ctgtgacttg aatacacaca acacaaagaa gtgactgaga attcttctgt      3780
     ctagcattat atgaagaaat cccgtttcca acgaaggcct caaagaagtc caaataagca      3840
     cctgcagact ttacaaacag agtgtttcca aactgctcta tgaaaagaaa ggttaaagtc      3900
     tgtgagttga acgcgcacat cacaaagtag ttgttgagaa tgattctgtg tagtttttat      3960
     acgaagatat ttccttttct gccataggcc tagaatcgct tgaaatctgc acttgcaaat      4020
     tccaaaaaag agtgtttcaa atctgctctc tctaaaggaa ggttcaaatc tgtgtgttga      4080
     atacaaacaa cacaaagaag ttactgagaa ttcttctgtc tagcattata tgaggaaatc      4140
     ccttttccaa cgaagggctc aaaaagggcc aattatccac tttcacattt acaaagagtg      4200
     tatttccaaa ctgctcaatt aaagaaaggt taaactctgt gagttgaaca cacacatcac      4260
     aaagtgtttt ctgagaatga ttttgtctag ttttaatacg aagttatatc cttttctatc      4320
     attgtgttcg aagcgtttga aatcttcact agcaaattcc acaaaagatt gtttcaaatc      4380
     tgctctctct caagaaaggt tcaactctgt gagttgaata cacacagcac aaagaagtta      4440
     gtgagaattc ttctgtctag cgttatatga agaaatcccg tttccaatga aggcctcaaa      4500
     gaggtcgaaa tatccacttg cagactttac aaatagagtg tttccaaact gctctatgaa      4560
     aagaaagtta aactctgtga attgaaggca cacatcacaa actagtttct gcgaatgact      4620
     ctgtgtactt ttaatacgaa gatatttcca tgtctaagat tggcgtgaaa tcgcttgaaa      4680
     tctccacttg caaattccac aaaaagagtg tttcaaaact gctctgaata aaggaaggtt      4740
     caactctgtg agttgaatac acacaacaga aaggatttag tgagaattct tctgtctagc      4800
     agtaaatgaa aaaatcccgc ttccaacgaa gtcctcaaag gggtccaagt aatcacttgc      4860
     agactttaca gacagagtct ttccaaactg ctctatgaaa agaaaggtgg gaggaggagc      4920
     caagatggcc gaataggaac agctccggtc tacagctccc agcgtgagcg acgcagaata      4980
     cgggtgattt ctgcatttcc atctgaggta ccgggttcat ctcactaggg agtgccagac      5040
     agtgggcgca gaccagtgtg tgtgcgcacc gtgcgcgagc cgaagcaggg cgaggcattg      5100
     cctcacctgg gaagcgcaag gggtcagtga gttccctttc cgagtcaaag acaggggtga      5160
     cggacgcacc tggaaaatcg ggtcactccc acccgattat tgcgcttttc agaccggctt      5220
     aagaaacggc gcaccacgag actatatccc acacctggct cagagggtcc tacgcccacg      5280
     gaatctcgct gattgctagc acagcactct gagatcaaac tgcaagtcgg cagcgaggct      5340
     ggtggagggg cgcccgccat tgcccaggct tgcttaggta aacaaagcag ccgggaagct      5400
     cgaactgggt ggagcccacc acagctcaag ggggcctgcc tgcctctgta ggctccacct      5460
     ctgggggcag ggcacagaca aacaaaaaga cagcagtaac ctctgcagac ttaagtgtcc      5520
     ctgtctgaca gctttgaaga gagcagtggt tctcccagca cgcagctgga gatctgagaa      5580
     tgggcagact gcctcctcaa gtgggtccct gacccctgac ccccgagcag cctaactggg      5640
     aggcaccccc cagcaggggc acactgatac ctcacacggc agggtattcc aacagacctg      5700
     cagctgaggg tcctgtctgt tagaaggaaa actaacaa                              5738
//


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