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EBI Dbfetch

ID   ABBA01020700; SV 1; linear; genomic DNA; WGS; HUM; 1523 BP.
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AC   ABBA01020700;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276982196, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1523
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1523
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 6be5876e76443eb5fcff730d9d3d29e8.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GL000093.
DR   ENA-CON; DS486394.
DR   ENA-CON; GJ211931.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1523
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1523 BP; 521 A; 318 C; 272 G; 412 T; 0 other;
     gtttcaactc tgctctctct aaagaaggtt caactctgtg agttgaatac acacaacaca        60
     aagaagttac cgagaattct tctgtgtagc gttatatgaa gaaatcccgt ttccaacgaa       120
     ggcctcaaag aggtccaaat atccacttgc agactttaca aacagagtgt tcccaaactg       180
     ctctatgaaa agaaagttta aacgctgtga gatgaaggca cacatcacaa acaagtttct       240
     acgaatgact ctgtgtactt tcaatatgaa gatatttcca tgtctaagat tggcgtcaaa       300
     tcgcttgaaa tctccacttg caaattccac aaaaagaggt tttcaaaact gctctgaata       360
     aaagaaggtt ccactctgtg agttgaatac acacaagaca aaggatttac tgagaattct       420
     tctgtctagc agtaaatgaa aaaatcccgc ctccaacgat gtcctcaaag gggtccaagt       480
     aatcacttgc agacttcaca gacagagtct ttccaaactg ctctatgaaa agaaaggtgg       540
     aactctgtga gctgaacgca cagataacaa agcagtttct gagaatgatt ctgtgtagtt       600
     tttacacgaa gatatttcca tttcaaagat tagcctcaac tcgcttgaaa tctccacttg       660
     caaattccac agaaagaatt tttcaaaact gctctgtcta aaggaaggta caactctgtg       720
     acttgaatac acacaacaca aagatgtgac tgagaattct tctgtctagc attatgtgaa       780
     gaaatcccgt ttccaacgaa ggcctcaaag aggtccaaat atccacttgc agactttaca       840
     aatagagtgt ttccaaactg ctctatgaaa agaaagatta aactctgtga gttgaaggca       900
     cacatcacaa gctagttttt gccaatgact ctgtgtactt ttaatacgaa gatatttcca       960
     tgtctaagat tggcatgaat tcgcttgaaa tctccacttc caaattccac aaaaagtgtt      1020
     tttcaaaact gctctgaata aaggaaggtt ccactctgtg agttgaatac acacaacaca      1080
     aaggatttac tgagaattct tctgtctggc agtaaatgag aaaccccgct tctacgaagg      1140
     cctcaaaggg gtctaactaa tcacttgcag actttacaga cagagtcttt ccaaactgct      1200
     ctatgaagag aaaggtgaaa ctctgtgaac tgaacgcaaa gataacaaag cagtttctga      1260
     gaatgattct gtgtagtttt tacacgaaga tatttccatt tcaaagatta gcctcaaatc      1320
     gcttgaaatc tccactttca aattccacag aaagagtgtt tcaaaactgc tctgaataaa      1380
     ggaaggttca actctgtgag ttgaatacac acaacacaaa ggatttactg agaattcttc      1440
     tgtctagcag taaatgaaaa aatcccgctt ccaacgaagt cctcaaaggg gtcgaagtaa      1500
     tcacttgcag actttacata cag                                              1523
//


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