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EBI Dbfetch

ID   ABBA01017888; SV 1; linear; genomic DNA; WGS; HUM; 3219 BP.
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AC   ABBA01017888;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276993298, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3219
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3219
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; e5f315b3ba59691fa5f2d93f902ca093.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270729.
DR   ENA-CON; DS486483.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3219
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3219 BP; 649 A; 1041 C; 202 G; 1327 T; 0 other;
     cttcgggtta attccattcc attccattcc attccattcc attccattcc attcaattgc        60
     attccattct attccattcc attccattcc tttacattac attacattcc actcgtgttg       120
     attcaattct attccattcc attccattcc gtttcactag ggttgattca attgcattct       180
     actccattgc atcctactcc tttccgttcc attccattcc attccattcc attccattcc       240
     ataccactga attcctgggg attccatttc attccattcc attctattcc attgaattcc       300
     attcgattcc agttcattca attccattat attccattcc attccattcc atttcattcc       360
     attaaattcc attctgctag gtttcattca attctattcc attccattcc attccattac       420
     acttctgttg attcagttcc attctgttcc attccaatcc atttcattcc attctattcc       480
     tttccattcc actccattcc attccattcc attccaatac actctactcg gtttcattca       540
     attccattct attccattcc attccattgc attccattcc attccaatcc attccactcc       600
     tctctgtttg attcaattcc attctattcc ttcccattcc attccattcg attccattcc       660
     tttccattcc attccattcc attccattct actcgggttg attccattcc attccattcc       720
     atgccattcc aatccattcc gttccattcc attccactcc cctcgggttg attcaatttc       780
     tttctattcc attccattcc attccattcc attccattcc acccgggatg attcatttca       840
     attctattcc attcgattcc attaaattcc attccagtcc agttgattca gttccattcc       900
     attgtattct tttccattcc attccccttt agttggttcg actccattcg attcgattcc       960
     attccattcc attcccctcg gattgattca attcctttca attccattcc attccattct      1020
     attccattcc attccattcc actcgggttg atttaattcc attgcattcc attaaattcc      1080
     attccattcc attccattcc atttgattcc attccattct attctattcc attccattcc      1140
     attccattcc atttcactcc attccattac actcgggttg tttcatttcc cttctattcc      1200
     attccattcc gttccattcc attccattcc attccattcc attccattcc attccactcc      1260
     attccactcg ggttgattca attccattcc attccgttcc ataacatacc attcaattcc      1320
     attccattcc agtttataca attcaattct attccattcc attccagttt attccattcc      1380
     attccattcc attgcattaa actcaggttg aatctattcc attccatacc attccattcc      1440
     attccattcc atttcatgcc agttgattca attgcattcc tttccattct gttccattca      1500
     actgcattcc aatccattcc attccattcc agttgattca attcccttct attatattgc      1560
     attccattcc attccattcc attgcacccg ggaccgttca attctattcc actgcattgc      1620
     attccactag ggttgattca tttccattcc attccattcc aatccattcc attccattcc      1680
     atttgatgca attccattct attccactct attccattcc attggattcc actcccttcc      1740
     attccattgt cttccagttg actcagttcc attccattcc attccattcc attcgtttcc      1800
     attccattcc tttccattcc attgcattcc cctggcgttg gttcaattcc attctcttac      1860
     attccattcc attgcattcc attgcattcc attcccctcg gattgattcc attccattcc      1920
     attccattcc attcgatacc tttccatgcc tttcatttag gttaatttcc attgcattct      1980
     attccattcc agttgattcc attccattct attccattca attccatttc attactttcc      2040
     agttggttcc attccattcc actctattgc atttcattcc attccattcc atttgattca      2100
     aattcattct attacattgc attctattcc attccattcc acttaggttg attcctttcc      2160
     attccattcc attccattcc agttgattcc actccattct attcaattgc attccattcc      2220
     attccattcc acttaagtta attccattca attccatacc attgcattcc attccattct      2280
     attccagttg attcaattcc actccattcc attccattct attccatttc ttcctctcat      2340
     gttgactgaa ttccattgaa ttccattcca ttaaattcca ttacatgcca tttccctcgg      2400
     gttgattcca ttccattcca ttccattcca ttccattcca ttccattcca ctcgcgttga      2460
     cacaattcta ttctattcca ttccattgca ttccattgag ttcctttcca ttccattcca      2520
     ttcaattcca atccattcca ttcctctctt ttgcattcaa ttccattcta ttccattcga      2580
     ttccattcca ttccattcca ttcctttcct ttcctttcca ttccattcca ttcctttcca      2640
     ttccattcca ttcctttcca ttccattcca ttccgttccg ttccattcca ttccactcca      2700
     ttccattcca atctattcca caccactctg ggtgattcaa ttccattcta ttccattgca      2760
     ttcctttcca ttatattcca ttccatttca ttccgttcca ttccattcca ttccattgca      2820
     gttgattcaa ttccattctc ttccattcca ttccattcca tttcattcca ttcaattcca      2880
     ttccattcta gccattccat tgcactcggt ttgattcatt tcctttctat tccattccat      2940
     tccattccat tgcattcctt tccattccat tcccttccag tttattcagt tccattctat      3000
     tccattccat tccataccat tccattccat tccactcggg ttggttcgaa tccattctat      3060
     tccaatccgt tcccttccat tccattccat tatattccat tccattactt tctgttctgt      3120
     tccattccat ttcattccat ttcgttgcat tcctttccat tccactcggg ttgattcaat      3180
     tccattctat tgcattccat tcccctccat tccatccat                             3219
//


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