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EBI Dbfetch

ID   ABBA01016542; SV 1; linear; genomic DNA; WGS; HUM; 3376 BP.
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AC   ABBA01016542;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279003861, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3376
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3376
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 70e88145b3491f579a334ac5a84568fd.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270438.
DR   ENA-CON; GJ212160.
DR   ENA-CON; GJ211997.
DR   ENA-CON; GJ212123.
DR   ENA-CON; DS486572.
DR   ENA-CON; GJ211960.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3376
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3376 BP; 1045 A; 530 C; 663 G; 1138 T; 0 other;
     acagaagcat tctgagaaac tttttgtgat gtgtgcattc atctcatgga gttgaaccta        60
     tcttttgatg gagcagtttt gaaactctct ttttgaagag tctggaatgg gtatttggag       120
     gcctttgtgg catatattgc aaaaggaaat atcttcacat aaaaactaca cagaagcatt       180
     ctgagaaact tctttgtgat gtgtgcactc aactcacaga gttgaagcta cctttgaatg       240
     agtagttttg aatctctcct tctgtagaat ctgcaagtgg atatttggag ccctttgcag       300
     cctatggtgg aaaaggaagt atcttcacat aaaaactaca cagaagcatt ctgagaaaat       360
     ttttgctgtt gtgtgcattc aactcacaca cttgaaccta tcttttgatt gagcaatttt       420
     gaaaccctgt gttggaagaa tctgaaagtg gatatctgga gcgctttggt gcctattgtg       480
     gaaaaggaaa tatcttcaaa aaaaaaaaaa aaaacacatg gaaacattct gagaaacttc       540
     tttgtgatgt atgcattcat ctcacagagt tgaacctttc tgttgattga gcagttttca       600
     cattcttttt ctagaatctg caagtggata tttggagctc tttgaggcct attgtggaaa       660
     atgaaatatc ttcacataaa aattacaaag aagcattctg aggaagttct ttgtgatgtg       720
     tgcattcatt tgacagagtt gaacatttct tttgtttgag ctgtttggga tcactctttc       780
     tgtagaatct gcaagtagat atttagagag ttttgaagct tatggtgtaa aagtaaatat       840
     cttcacataa aaactacgca gaagcattct gagaaacttc tttgtgatga gtgccttcat       900
     aacacagagt tgaatctatc ttttgattca gtagttttga atctctcttt atgtcgaatc       960
     tgcaagtaga tatttgaagc ccttttcagc ctatggagga aaaggaagta ccatgaaata      1020
     aaaactacac agaagcattc tgagaatctt cttttggttg tgtgcattca tctcacagtg      1080
     ttaaaccttt cttttggtag agcatttttg aaacactgtt tttgaaaaat ctgcaagagg      1140
     atatttggag cactttgagg cctattgtgg acaagtaaat atgataacat aaaaactata      1200
     aagaagcatt ctgagtaact tcatttgatg tgtgcattca ccacacagag ttgaacctat      1260
     cttatgattg agcagttttg aaacactctc tttgtataat cttcaagttg atatttgaag      1320
     cactttgagg cctattgtgg aaaagtaaca tcttcacata aaaattgcac agaagcatta      1380
     tgagaatctt ctttgtgatg tgtgcattca tctcacagat gtgaaccttt cttttggtag      1440
     aacagttttg aaacacggtt tttgtaaaat ctgcaggagg atattttgag cgctttgatg      1500
     cctactgtgg aaaactaaat attttcacat aaaaactatg cagaggcatt ctgagtaagt      1560
     actttgtgat gtgtgcattc atctcacaga gttgtacatt tcttttgatt gagcaatttt      1620
     gaaacactct ttctgtagaa tctgcaagtg gatattttga gcactttgag gactatagtg      1680
     gaaaaggaaa tatcttcaca taaaaactac acagaagtat tctgagaaac ttctttgcca      1740
     tgtgagcatt caacacacag agttgaacct atcttttgat agatcagttt tgaatctctc      1800
     tttttgtaga atctgcaaga ggatatttgg atacctttgt ggtctatgga gaaagaggaa      1860
     atatcttcaa ataaatacta cacagaagca ttctgagaaa cttctttgtg atgtgtgcat      1920
     tcatcccaca gagttgaaac tatcttatga ttgagcagtt ttgaaacact ctctttgtag      1980
     aatctgaaag tgaatacctg gggcactctg tgtcctattg tggaaaacga aatatcttca      2040
     cataaaaact acacagaagg attctgagaa acttctttgt gatgtgtgca ttcatttgac      2100
     agagttgaca gtttcttttg attgagcagt tttgaaacac agtttttgta gaatctgcaa      2160
     gtggatattt ggagcccttt gaggcctact gtggaaaaac aaatatcttc acataaaaac      2220
     cacacagagg cattctgaga aactactttg tgatgtgtgc attcatctca cagtgttgaa      2280
     actttctttt gattgaggag ttttgaaaca ctgttttgta gaatctgcaa gaggatgttt      2340
     ggagcgcttt gaggcctatt ttggaaaacg aaataatttc acataaaaac tacactgaaa      2400
     cattctgaga aactaatcat tctgagaaac taatttgtga tgagtgcatt catcacatag      2460
     atttgaactt ttcttttgat tgagcagttt tgaaactctc tttttgtaga atctacaggt      2520
     agataattgg aacgctttca ggactattgt ggaaaaggaa gtatcttcac ataaaaacta      2580
     cacagaagca ttcggagaaa cttctttgtg atgtgtgcat tcatctcaca gaattgaacc      2640
     tatcttatga tttagcagtt ttgaaataac ctctttgtag aatctgcaag tggatatttg      2700
     gagcgttttg aggctttttg tggaaaagga aatatcttca cataaacact agacaaaagc      2760
     attctgagaa acttccttgt gatgagtgca ttcaacgcat agatttcaac ataccttttg      2820
     attgagcagt tttgaatctc tctttttgta aaatcagcaa gtggatattt tgagcccttt      2880
     gcagcctatg gtggaaaagg aaatatcttc aaataaaaac tacacagaag cattctgaga      2940
     aacttctttt ttatgtatgc attaaactct gagaattgaa cttatctttt gcttgagtag      3000
     ttttgaatct ctctttttgt agaatctgca ggtggatatt gggagatatt agtggccaat      3060
     ggagaaaaag ggaatatctt caaataaaaa ctacacagaa gcattctgag aaactttttt      3120
     gtgatgtgcg ctttcatctc acagagttta acctatctta tgattgatca gatttgaaac      3180
     attggctttg tagaatctgc aagtggatat ttggagatct tttaggccta cggtggaaaa      3240
     ggatttatct tcccataaaa actacaaaga agcattcaaa gaaacttctt tgtgatgtgt      3300
     gcattcaact cacagagttg tacctatctt ttggttgagc agttttgaat ttctcttttt      3360
     gtagaatctg caagtg                                                      3376
//


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