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EBI Dbfetch

ID   ABBA01015873; SV 1; linear; genomic DNA; WGS; HUM; 1350 BP.
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AC   ABBA01015873;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276862557, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1350
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1350
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 0d9023ef0408e4c1ab82199caa6b3f39.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211996.
DR   ENA-CON; GL000198.
DR   ENA-CON; GJ212106.
DR   ENA-CON; GJ212159.
DR   ENA-CON; DS486459.
DR   ENA-CON; GJ211959.
DR   ENA-CON; GJ212122.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01015873.1:1-1350; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1350
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1350 BP; 441 A; 268 C; 221 G; 420 T; 0 other;
     tcacacatca caaagaagtt tctcagaatt cttctgtcta gtttttaggt gaagatgttt        60
     ccttttccac tataggcctc aaagtgctcc aaatgtccac ttgcagatta tacaaaaaga       120
     gagttaaaaa accgctcaaa caaatgagag gtttaactct gtgagatgaa ttcacacatc       180
     acaaagaagt ttctcagatt ggttctgtct acattctatg tgaagatatt tccttttcta       240
     agataggcag caaagcgttc caaatgtcca catgcagatt ctacaaaaag agtgtttcca       300
     aactgctgaa tcaaaagaaa ggatcaactc ggtgagatga acgcacgcat caaagcgaag       360
     tttctcagaa ttcttctgtc tagtttttat gtgaagatag ttccttttcc accataggct       420
     tcaaagcact ccaaatgtcc acttgcagat tctacaaaaa gagtttcaaa actgttcaat       480
     caaaagaaag gtttaactct gtgagacgaa tgcacacatt acaaagtatt ttctcagatt       540
     gcttcagtct agattttatg tgaagatatt ttctcttata acataggccg caaagcacac       600
     aaaatgtcca cttgcagatt ctacaaaaag agtatttcca aactgctcaa tcaaaaggaa       660
     gtttcaactc tgtgagatga atgcacacaa cacaaagaag tttctcagaa ttcttctgtc       720
     tagtttttat gtgaagatat ttcctttccc actataggcc tcaaagcact caaaatatcc       780
     aatttcagat tctgcaaaaa gagagtttca aaattcctca atcaaaagaa aggtttaact       840
     ctgtgagatg aatgcacaca tcacaaagaa gtttttcaga attcttctgt ctagtcttta       900
     tgtgaagata ttttgttttc cacaatgttc ctcaaagccc tccaaatgtc cacttgcaga       960
     ttctatgaaa ggagagtttt gaaactcctc aatcaaaaga aggtttcact ctttgaggtg      1020
     aatgaacact tccctaagaa gtttctcaga ttgcttctgt ctagatttta tgtgaaggta      1080
     tttccttttc taacgtaggc cggaaggtgt tccaaatgtc cacttgcaga atctacaaaa      1140
     agagagtttc caaactgcta aatcaaaggg aagattcaac tgtgtgagat gaatgccagc      1200
     atcacaaaga tgtttctcag aaatcttctt tctagttttt atgtgaagat atttcctttt      1260
     ccaccatagg cctaaaaacg attgcacaca tcacaaagaa gtttcccagg attcttctac      1320
     ctagttttta tttgaagata tttccttttc                                       1350
//


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