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EBI Dbfetch

ID   ABBA01015869; SV 1; linear; genomic DNA; WGS; HUM; 3061 BP.
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AC   ABBA01015869;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276944086, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3061
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3061
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; def592804ca598f269ae44227c6b6935.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211996.
DR   ENA-CON; GL000198.
DR   ENA-CON; GJ212106.
DR   ENA-CON; GJ212159.
DR   ENA-CON; DS486459.
DR   ENA-CON; GJ211959.
DR   ENA-CON; GJ212122.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3061
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3061 BP; 957 A; 441 C; 659 G; 1004 T; 0 other;
     gtctgtttgt ggaatctgca aagggatatt tatgagagct ttgggcccaa tggtgaaaaa        60
     agaaaatata ttcatataaa aggtataaag gtttcttaga aacagctttg tggtgtgtgt       120
     attgatctca gagaggtaaa cgtttatttt ctatgatctg tctggaaact ctgttcttgt       180
     agaatctgca aagggatatt tgtgagtgct ttaaggccta tggtgaaaaa ggaaatatct       240
     tcacttaaaa actagacaga agctttctta gtggcttctt tgtgatgtgt gcaatcatct       300
     cacagagttg aaccattctt ttgattgagc agtctggaaa cagtcttttt gtagaagctg       360
     caagggatat ttgtcacgac ttggagtgct atggtgaaaa aggaaatatc ttcacataaa       420
     aaatggacag aagatttctg agaaaccttc ttgtgatgtg tgcatccatc tcacagagtt       480
     caaacattta tttgattgag cagttgggaa gcagtctttt tgcagaatct acaaagagat       540
     attgctgagc actttgaggc ctgtggtgaa aaaggaaata tcttcacata aaaactataa       600
     acaaggtttc tgagaaactt ctttgtgatg tatgcattca tctcacggag ttgaactatt       660
     cttttgattg accacttcgg aaacaatctt tttgtagaat ctgcaaaggg atattcttga       720
     gctctttgag tcctggagag aaaaaagaaa tatcatcaca taaaaagtat aaagaaggtt       780
     tctgagaaac agttttgtga cgtgtgcatt catctcacag agaaaaacgt ttgttttatt       840
     tgatcagtgt ggaaattctg ttcttgtaga atctgctaag ggatattttt gagcagatgg       900
     aggcctatgg tgaaaaagga aatgtcttcg tataaaaatt agacagaagc ctcctgcgaa       960
     actttttaat gatgtgtgca ttcatctcac agagttgaaa ctttcttttc attgagccat      1020
     ttggaaacag tctttttgtg gactctgcaa atggatattt ggagcacttt gaggcctatg      1080
     gtgaaaaatg aaatatattc acataaaaac cagactggaa gtttctgaga aacttctttg      1140
     agatgtgtgc attcatctca caaagttcaa taattctttt tattgagcgg tttggaaaca      1200
     gtctttttgt agaatctgca tagggatatt tgtgagggct ttgaggtcta tggtgaaaaa      1260
     ggaaatatct tcacagaaaa actataaagg aggcttctga ggaacttctt tgtgatgtgt      1320
     gcattcatct cacatacttc aaactttctt ttgattgagc agtttggaaa cagtcttttt      1380
     aaatattctt ctagtggatg cttgtgagca ccttgaggct catggggaaa aagaaaacat      1440
     tcacataaaa acttaataga agctttctga gaaactactt tttgacatgt gcattcatct      1500
     catacagttg aacgtttctt ttgatgagca gtgtggaaac tatctttttg tagaatctgc      1560
     aaagggacat ttttgagcac tttgcatcct gtggtggaaa aggagatacc ttcacataaa      1620
     aactagacag aatgtttctc agaaactgct ttgtgatatg tgcattcacc tcccagatat      1680
     gcctgtttct tttcattgag aagattggaa actcttttct tgtaagatct gcaaagggat      1740
     atttgtgagc cctttgaggt gtatggtgaa aaaggacata tcttcacata aaaagtacac      1800
     agaagctttc tgagaaacat cgtggtgatg tgagcattca cttcacagtg ttgaaacatt      1860
     cttttgattg agcaatgtgt aaagagtctt tttgtagaat ctgcaaaggg atatttgtga      1920
     atgcttagag gcctatggtg aaaaaggaaa tatcttcaca taaaaactag agagaagctt      1980
     tctgagaaac ctctttgtgg tgtgcataca tctcacagag ttgaaccttt cttttgattg      2040
     agcaatttgg aagaagtatt tttgtagaag ctgtaaagag atatttgtga gcactttgag      2100
     gcttatggtg aaaaactaga cagaagcatc ctgagaaact gctttgtgac atgtgcattc      2160
     atcacacaga gttgaacctt tgttttgatt gagccgtttg gaaacagtct ttttgtagac      2220
     tctgcaaatg gatatttgga gcactttgag gcctatcgtg aaaaaggaaa tatattcaca      2280
     taaaaactag actgaaggat tctgaaaact tctttgagct gtgtgcattc atctgacagt      2340
     gttcaataat tctttttatt gagccatttg gaaacagtct ttttgtagaa tctgcaaagg      2400
     gatatttggg aggtctttga ggcctatgtt gaaaaaggaa atatcttcac agaaaaacca      2460
     taaagaaggt ttctgagaaa tttctttgga tgtgtgcatt caccacacag aggtgaaaca      2520
     ttctttggat tgagcagttt gcaaacagtc tttttgtaga atctgcagag ggatatttgt      2580
     agcactttga ggcctatgtg aataaggaaa tatcttcaca taaaaactag acaaaagttt      2640
     tctgagaaaa attttgtgat gtgtgcattt atctcataga gtttaacatt tgttttgatt      2700
     gagcagtttg gaaacagtct ttttgtacaa tctgcaaagg gatatttagg agcaagttga      2760
     gacctatggt gaaaaaggaa atatcttcac ataaaaacta gaaagaagca ttctgagaaa      2820
     ctgctttaag atatgtgtgt tcatctcaca gaggtaaaca tttcttttca ttgagcagtt      2880
     tgtaaactct gttattctag agtctgcaaa gggatatttt tgagtgcttt gagacccatg      2940
     ttgaaaaagg aaatatcttc acataaaaac tagtgagaag tttgctgaga aactactttc      3000
     tgatgtgtgc attcatctaa cagagttgaa agtttctttt gattgagcag tttggaaaca      3060
     g                                                                      3061
//


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