spacer

EBI Dbfetch

ID   ABBA01015868; SV 1; linear; genomic DNA; WGS; HUM; 2160 BP.
XX
AC   ABBA01015868;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276820869, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2160
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-2160
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 882030043722d42dd1f21ce065fb2085.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211996.
DR   ENA-CON; GL000198.
DR   ENA-CON; GJ212106.
DR   ENA-CON; GJ212159.
DR   ENA-CON; DS486459.
DR   ENA-CON; GJ211959.
DR   ENA-CON; GJ212122.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2160
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 2160 BP; 697 A; 448 C; 328 G; 687 T; 0 other;
     aaaacttcca ctctgcgaga tgaatgcaca catcacagag aagtttctca gaaagtttct        60
     gtctagtttt tatttgctga tactctcttt ttcaccatag acctcaaacc tcccataaat       120
     aaccctttgc agattctaca aaaagactgt ttccaaacta ctcaatcgca agaaagcttc       180
     acctctgtga ggtgaatgca cacatcacaa agaagtttct cagaaagctt ctacctagta       240
     aaaactagat gttgaagatg ttgaagatgt ttcctttttc aatatgggcc tcaaagtgct       300
     cacaaatgtc cctttacaga ttttacaaaa agactgttac caaactgctc aactgaaaca       360
     aagcttcaac tctttgagat gaatgcacac atcacaaaga agtttctcag aaagcttccg       420
     tctagttttt atgtgaagat atttcctttt tcaccgtaag cctcaaagca ttcaaattat       480
     cattttgcag attctacaaa aagactgttt ccaacctgct ctatctaaag aaaggttcaa       540
     ctatgtgaga agaatgcaca catcaaaaat aagtttgtca gaatgcttct gtctagtttt       600
     tatctgaaga catttccttt ttcaccatag gccaaaaagg gatctcaaat atccctttgt       660
     acattctaca aaggactgtt tccaaactgc tcaatccaaa gacaggttca actctttggg       720
     atgaatgcac acatcacaac gaagtttctc agaaagcttc tgtctagttt ttgtgtgaag       780
     atattacttt tttcaccata ggcttcaaag ggctcacaaa tatcgcaaag cagattctac       840
     aaaaagactc tatccaaact ggttaaggaa aagaacactt caaatctgtg agatgaatgt       900
     gcacatctca aagaattttc tcagaaagct tctgtctagt ttttatgtga agatatttcc       960
     attttcatca tagatctgaa accgcctata tataaccgtt tgcagattct acaaaaagac      1020
     tgtttccaaa ctgctcaatc aaataaagct tctactctgt gagatgaatg cagacatcac      1080
     agagaagttt ctcagaaagt ttctgtctag tttttatttg tcgatactcc ctttttcacc      1140
     ataggcctca aactgctcat aaataaccct ttgcagattc tacagaagga ctgtttccaa      1200
     actgctcaat caaatgaaag ttcagctgtg tgagatgaat gcacacatca aaaataagtt      1260
     tctcagaacg tttctgtcaa gtttttaggt gaagatactt ctttttcacc ataagcctca      1320
     aagcgttccc aaattttcct ttgcagattc tatgaaaaga ctgtttcaaa actgctcaat      1380
     caaaagaaaa gttcaattct gtgtgatgaa tgcacacatc acaacgaagt ttctcagaag      1440
     gcttctgtct agattttatt tctggatatt tcctttttca caataggccg cagaaagctc      1500
     acaaatatca ctttgcatat tctacaaaaa gacagtttcc aatctgctca atgaaagaat      1560
     attcaactct gtgagttgaa tgcatgcatc acaaagggtt tctcagaatg cttctgtcta      1620
     gtttttatat gaagatattt cctttttcat cacatgcctc aaaccactcc gaaacatccc      1680
     tttgcagatt gtccaaaaag actgtttcca aactgctcaa tcaaaagaaa gattcaagtc      1740
     tttgagatgc atacacccat cacaaagaag tttcccagaa aacatgagtc taattttaat      1800
     gtgaagatat ttcctttttc accataagcc tcaaagtgtt cacaaatatc actttgcagt      1860
     ttctacaaaa agactgtttc caaactaccc aatcaaaaga aaggttcaac tctgtgagat      1920
     gaatgcacac atcacaaaga agtttcacag atagctctta ttattttgag atacgtccca      1980
     tcaataccta atttattgag agtttttagc ttgaaggctt gtagaatttt gtaaaggcct      2040
     tttctgcatc tattgagata atcatatggt ttttgtcttt ggttcttttt atatgctgga      2100
     ttacattttt ttatttgcat atattgaacc agtgttgcat cccagggatg aagcccactg      2160
//


spacer
spacer