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EBI Dbfetch

ID   ABBA01009536; SV 1; linear; genomic DNA; WGS; HUM; 4730 BP.
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AC   ABBA01009536;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276988133, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-4730
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-4730
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; c08eb194eee231842a7d29afd5cd72cd.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212058.
DR   ENA-CON; DS486582.
DR   ENA-CON; KI270538.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01009536.1:1-4730; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4730
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 4730 BP; 1459 A; 1021 C; 821 G; 1429 T; 0 other;
     aagcagttcc tgagaatgct tctgtctagt ttgtatctga agtatttcct tttccatcat        60
     aggcctcaaa tcgctccaca tatccacttg caaatactac aaaaagactg tttcaaaagt       120
     tctctctcaa aaggaaggtt caactctgtg agttgaatgc acacatcaca aggcagtttc       180
     tgaaaacgct tccgtctagt tttttatttg aaggtatttc cttttccttc ttcagcctca       240
     aatcactgca aatatccact tgcagatact acaaaaagac tgtttcaaaa ccgctctctc       300
     aaaaggaagg ttcgactctg tgagttgaac gcacacgtta cgaagcagtt tctgagaatg       360
     cttctgtcta tttttcaggt gaagatatca ctttttccaa catacgtaaa aaagtactcg       420
     aaatgaacac ttgcagattc tacaaaaagg atgtctcaac actgctctat caaaagaaag       480
     gttcaacgat gtgaattgaa cacacacatc acaaaggatt ttcagagaat gcttctgtct       540
     agtgtttaag tgacgatatt accttttccc acataggcaa caaagcgctc caaatgaata       600
     cttgtgggtt ctacaaaaag tgtgtttcaa cactgctcta tcgaaagaaa gtttcaagtc       660
     tgtgagttga atgcacacat cacaacgaac tttctgagaa tgcttgggtc tactttttat       720
     gttaaggtac ctgtttccaa cgaataactc aaggagttcc aaatatacac agtcagatac       780
     tgcaaaagga gtgtttcatt cctgctctct caaaagacag tttcaactct gttagttgaa       840
     tgcacacatc tcagtgaagt tcctgagaag gcttctgcct agttttttgt gaagatattc       900
     ccttttccac cataggcttc acagcactcc aaatgaaatt ttgcaggtcc tacaaaaaga       960
     ctgattcaaa tctgctgtct caaaaggaag gttcaactgt gtgagttgaa tgcacacatc      1020
     acaaagcagt tcctgagaat gcttctgtct agtttgtatg tgaagatatt tccttttcca      1080
     tcataggcct caaatcgctc caaatatcca cttgcagata ctacaaaaat accgtttcaa      1140
     cactgctctc tccaatggaa ggttcaactc tgtgagttga atgcacatat cacaaagcag      1200
     tttctgagaa tgcttctgtc tagtctagtt agaatgtgaa gatatcccgt ttacaacaaa      1260
     ttcctccgag agctctaaat atctggaagc agattctaca aaagcaatgc ttcaaacctg      1320
     ctctgtcaaa ggaaaggttc agctcgggga attgaacaca aacatcagaa aggagtttct      1380
     gagaatgctt ctgtctagtg tttctatgaa gataattctt tttctaccat aggcaacaat      1440
     acgctgcaaa tgaacacttg cagatttcac aaaaactgtg ttttaacact gctctatcaa      1500
     aacaaaggtc caagtctgtg agttgactgc acgcgtcaca aagcagtttc ggagaatgat      1560
     tctgtctagc tttttatgta acgatatttt ctttgcacca gaggcaacaa agcacacgga      1620
     atgagatctt gcggattcta caaaaattgt gtttcaacac tgctctatcc aaagaaaggt      1680
     tcgagtccgt gagttgaact cacacaacag aaagcagctt ctgaggatgc ttctgtctgg      1740
     tttgtatgtt aagtcatttc cttttccatc taaatcgcct caaatcgcta aaagttccac      1800
     tcgcaggtac tacaaaagga ctttcaaaac tgctctctca aaaggaaggt tcaactgtgt      1860
     gagttgaatg cacacatcac atagcagttt ttgagaatgc ttctgtctag tttgtatgtg      1920
     aagagattcc atttacaacg aattcctcag agagctccaa atatccacaa gtagattcta      1980
     caaaagcagt gttttgaaac tgctctatca atagaaaggt tcaactctgt taattgatca      2040
     cacacatcct aaggagtttc tgagaatcct tctgtctagt ttttatttga agatatttct      2100
     tcttccacca taggcaacaa agcgctccaa aggaactatt gcggattcta caaaaagcgt      2160
     gtttctacac tgctctatca aaagaaagtt tcaagtctgt gagttgaatt gcacacatcc      2220
     cagtgaactt tcggaaaatg catgggtcta cttttcatgt gaagataccc gtttccaacg      2280
     aattcttcaa agagttccaa gtatccacaa gcagattcta caaaaggagt gcttaaatgc      2340
     tggtctatct aaagacagat tcaactctgt tagttaaatg cacacatctc agtgaagttc      2400
     ctgagaatgc ttctttctag tttttatgtg aatatatctc cttttccacc ataggcttta      2460
     aagcgctcca aatgagaact gtcagatcct cataaaagac ggcctcaaaa ccgctctatc      2520
     aaaagaaggg ttccactcca agaggtgaat tcgcatatca cgaagaagtt tctgagaatg      2580
     cttctgtcca gtttttatgt gaggatattc ccttttccat cataggcctc aagtcgctct      2640
     aaatatccaa tttccgatac tacaaaaaga ctgtttcaaa actgctctct caaagggaag      2700
     gttcaagtcc gtgagttgaa tgcacacatc acaaagcagt tcctgagaat gcttctgtct      2760
     agtttgtatc tgaagttatt tccttttcca tcataggcct caaatcgctc caaatatcca      2820
     cttgcaaata ctacaaaaag actgtttcaa aagttctctc tcaaaaggag gttcaattct      2880
     gtgagttgaa tgcacacatc acaaggtagt ttctgaaaac gcttccgtct cgttttttat      2940
     ttgaaggtat ttccttttcc ttcttcggcc tcaaatcact gcaaatatcc acttgcagat      3000
     actacaaaaa gactgtttca aaaccgctct ctcaaaagga aggttcgact ctgtgagttg      3060
     aatgcacacg ttacgaagca gtttctgaga atgcttcttt ctatttttca ggtgaatata      3120
     tcactttttc caacatacgt aaaaaagtac tcgaaatgaa cacttgcaga ttctacaaaa      3180
     aggatgtttc aacactgctc tatcaaaaga aaggttcaac gatgtgaatt gaacacacac      3240
     ttcacaaagg agtttcagag aatgcttctg tctagtgttt aggtgacgat attacctttt      3300
     cccacatagg caacaaagcg ctccaaatga atacttgtgg gttctacaaa gagtgtgttt      3360
     caacactgct ctatcaaaag aaagtttcca gtctgtgagt tgaatgcaca catcacaacg      3420
     aactttctga gaatgcttgg gtctactttt tatgtgaaga tacccgtttc caatgaataa      3480
     cacaaagagt tccaaatata cacagtcagg tactgcaaaa ggagtgtttc actcctactc      3540
     tgtcaaaaga cagtttcaac tctgttagtt gaatgcacac atctcagtgt agttcctgag      3600
     aaggcttctg cctagttttt tgtgaagata ttcccttttc caccataggc ttcacagcgc      3660
     tccaaatgaa aacttgcagg tcctacaaaa agactgattc aaaactgctc tcccaaaagg      3720
     aaggttcaac tgtgtgagtt gaatgcacac atcacaaagc agttcctgag aatccttctg      3780
     tctagtttgt atgtgaagat atttcctttt ccatcatagg cctcaaatcg ctccaaatat      3840
     ccacttgcag atactacaaa aataccgttt caacactgct ctctccaatg gaaggttcaa      3900
     ctctgtgagt tgagtgcaca catcacaatg cagtttctga gaatacttct gtctagtttg      3960
     tacgtgaagg tatttccttt tccatcttag gccccaaatc actacaaata tccacttgca      4020
     gatactacaa aaagtctgtt tcaaaacctc tctctcaaaa ggaaagttca aatctgtgag      4080
     ttgaatgcac acatcacaaa gcagttcctg agactgcttc tgtctagttt gtatgtgaag      4140
     atatttcctt ttccatcata ggcctcaaat cgctccaaat atccacttgc ccattctaca      4200
     aatgagtgtt tcaaaactgc tcaatcaaac gaaaggaacc actatgtgag atgaatacac      4260
     acatcacaat gtagttcctg agaatgtttc tatctacttt gtatgtgaag ttatttcctt      4320
     ttcctccata ggtttcaaag cgcttcaaat ttccatttgc agacactata aaaaggttat      4380
     ttccaaattg ctcaatgaaa ggtaaggttc aaatattgag atgaatgcac acatcacaag      4440
     gaattttctc agaatgcttc tggcttgttt ttatgtgaag attgttcctt ttccaccata      4500
     ggcctcaatg agctccaaag agccatttgt ggataataca aaaagaatat ctccgaactg      4560
     ctccatcaaa ggaaatgttc aactgtgtga tatgagtgca ctcataagaa agaagtttct      4620
     cagaatgctt ctgtgtagtt tttatgtgaa gatatttcct tttccactat aggcctcaaa      4680
     gcgctccaaa tatccatttg cagatactgc aaaagactgt tccaaactgc                 4730
//


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