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EBI Dbfetch

ID   ABBA01009532; SV 1; linear; genomic DNA; WGS; HUM; 4924 BP.
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AC   ABBA01009532;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276988130, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-4924
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-4924
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 0ac10823d1c8c797dd7e748f27e38399.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212058.
DR   ENA-CON; DS486582.
DR   ENA-CON; KI270538.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01009532.1:1-4924; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4924
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 4924 BP; 1491 A; 881 C; 987 G; 1565 T; 0 other;
     ttttgaaaca ctctttttgt aggctctgca aatagatatt tggatagctg tgaggctttc        60
     gttggaaacg agaatatctt cacattaaaa ctagacagaa gcaacctcag aaacttcttt       120
     gtgatgtttg cattcaactc acagaattga acattccctt tcatagagca gctttgaaag       180
     actctttttg ttgtatctgc aagtggacat ttggagagct ttgatgcctg cggtgaaaaa       240
     ggaagtatct tcacataaaa accagacaga cgcattctca gaaacatctc tgtgttgggt       300
     gtactcaact cacagagttg aacctttctt ttgatagagc agttttgaaa cactcttttt       360
     gtagaacgtg caagtggata tttggatagc tttgaggctt tcatttgaaa cgggaatatc       420
     ttctcataaa aactagaggg aatcattctc agaaactact ttgtgatgtt tgcattcaac       480
     tcacggagtt aaacattccc tttcaaagag cagttttgaa acactgtttt tgtagcatct       540
     ggaagtggac attcggggca ctttgaggcc tatggcgaaa aaggaaatat atccacataa       600
     aaagtagaaa gagaattctg agaaactact ttgtgatgat tgcattcaac tcacagagtt       660
     gaacattcct attgatagag cagttttcaa acattctttt catagagtct gcaagtggac       720
     atttggaggg ctttcaggcc tgtggtggaa aaggaattat cgtcacataa aaactagaga       780
     gaagcattgt cagaaactta tttgtgatga ttgcgttcaa cccacagtgt tgaagattcc       840
     ttttcaaaca gcagtttcga cacactcttt ctgtggaatc tgcaagtgga tatttggacc       900
     tctctgagga tttagttgga aaagggataa acctcacata actaaacaga agcattctca       960
     gaacctactt ggtgatgatt ccattcaact cacagaattg aacattccta ttgatagagc      1020
     agtttggaaa ctctcttttt gtagaatctg caagtggaga tgtggagcac tttgaggcct      1080
     gtggtagtaa aggaaatagc ttcatataaa aactagacag aagcattctc agaaaattct      1140
     ttttgacgat tgagtttaac tcacagagct gaacattcct ttggatggag ctgttttgaa      1200
     acacaccttt tgtagaatct gcaagtggat atttggacct ctctgaggat ttcgttggaa      1260
     acgggataac ttcacctaac taaacagaag cagtctcaga aacttctttg tgatgtttgc      1320
     attcaaatcc cagacttgaa ccttcctttg atagttcagg tttgaaaccc tctttttgta      1380
     ggatctgcca gtggatattt ggaccacttt gtggccttca ttcgaaacgg gtataccttc      1440
     acataaaatc tagacagaag ccttctcaga aacttctctg tgatgattgc attcaagtca      1500
     cggagttgaa cactcctttt gatagagcat ttttgaaact ctctttttgt agaatctgca      1560
     agtggatatg tggacctctt tgaagatttc tttggaaacg ggaatatctt cacataaaaa      1620
     ctaaacagaa gcattctcag aaactccttt gtgatgtttg ttttcaactc acagagttta      1680
     acattgcttt ccatagagca gttttgaaac attcttttct tagtgtcggc aagtggacat      1740
     ttggagcgct ttcaggcctg tggtggaaaa cgaattatcg tcacataaaa actagagaga      1800
     agcattgtca gaaacttctt tgtgatgatt gcattcaact caccgagttg aagattcctt      1860
     ttcaagcagc agtttcgaaa cactctttct gtggaatctg caagtggata tttggacctc      1920
     tttgaagatt tcattggaaa cgggataatc ttcacataaa agctaaatgg aagcattctc      1980
     agaaacttct ttgtgatgtt tgcattcaac tcacagagtt gaactttcct tttgagagag      2040
     aagctttgaa acactctttt tctagaatct gcaagtggac atttggaggg ctttgaggcc      2100
     tgtgttggaa aagggaatat cttcccgtaa aaactagata gaagcattct cagaaaatac      2160
     tttgggatga ttgcattcaa gtcacagagt tgaacattcc ctttgataga gcagtttgga      2220
     aacactcttt ttgtagaatc tgcaagtgga gatttggatc gctttgagac ctatggtagt      2280
     aaaggaaata acttcatcta aaaactagac agtagcattc tcagaaaact gtttgtgacg      2340
     attgagttta gctcacagag ctgcacattc cttttgacgg agcagtttca aatcacactt      2400
     tttgtagaat ctgcaagtgg atatttggac ctctctgagg atttccttgg aaacgggata      2460
     aacctcacat aactaaacag aagcattctc agaaccttct tcgtgatgtt tgcattcaac      2520
     tcacagtgtt gaacctttct ttgatagttc aggtttgaaa cactcttttt gcagagtctg      2580
     caagtggata tttggacctc tttgaggcct accatagtaa aggaaataac ttcatataaa      2640
     aacaagacag aagcattctc agaaaattct ctgtgatgat tgagtttaac tcacagagct      2700
     gaacattcct ttggatggag gagtttcgaa actcactttt tgtagaatct gcaagtggat      2760
     atttggacct ctctgaggat tccattgaaa acgggataat ttcagctaac taaacagaag      2820
     cagtctcaga aacttctttg tcatgtttgc cttcaaatcc cagagttgaa ccttcctttg      2880
     atagttcagg tttgaaacac tctttttgta ggatctgcaa gtgaatattt ggaacactct      2940
     gtggccttcg ttctaaacgg gtatatcttc acataaaatc tagacagaag cattctcaga      3000
     aacttctttg tgatgcctgc attcaactca cagagttgaa cattgctttt catagagcag      3060
     ttttgaaaca atctttttgt agaatctgta agtggaaact tggagcactt tgaggcctat      3120
     ggtgaaaaag ggaatacctt ccgataaaaa ctagactgaa gaattctcag aaacttcttt      3180
     gtgaggtgtg tactcagctc acagagtcga actcttcttt tcacagagca gttttgaaac      3240
     actctttttg tagactctgc aagtggatat tttgatagct gtgaggcttt cgttggaaac      3300
     gggaatatct tcacattaaa acttgacaga agcaatctca gaaacttctt agtggtgttt      3360
     gcaatcaact cacaggattg aacattccct ttcatagagc agttttgaaa cactcttttt      3420
     gttgtatctg gacttggaca tttggagaga tttgatgcct gcggtgaaaa aagaattatc      3480
     ttcacataaa aaccagacag aagcattctc agaaacttct ctttgatggt tgtactcagc      3540
     tgacagggtt gatcctttct tttgatagag ctcttttgaa acacgctttc tgaagaatct      3600
     gctagtggat atttggatag ctttgagcct ttcattgaaa cgggtatatc ttctcataaa      3660
     agctagaggg aagcattctc agaaactact ttgtgatgtt tgcattcaac tcacagaggt      3720
     gaaaattccc tttcaaagag cagttttgaa acattgtttt tgtagcatct ggaagtagac      3780
     atttggggca ctttgaggcc tatgatgaaa aaggaaatat attcacatag aaactagaaa      3840
     gaaaaattct cagaaactac tttgtgatgt gtgtactcaa ctcacagagt tgaaccttac      3900
     ctttgttaca gcacttttga aacactcttt ttagagaatc tgcaagtgga tatttggata      3960
     gctttgaggc tttcattgga aacgggaata tcttcaccta aaaacttaac agaagcattc      4020
     tcagaaactt ctttgtgatg tttgcactca actcacagag ttgaacattc cttctcatag      4080
     agcagttttg aaacactctt tttgtgaaat ctgcaagtgg acatttgtag cgatttgaga      4140
     cgtatggtga aaaaggaaat atcttcacat aaaaagtgga cagaagcatt ctcagaaact      4200
     tctttgtgat gtgagtactc aactcacaga gttaaacttt tcctttgata cagcactttt      4260
     gaaacactct ttttggagaa tctgcaagtg gatatttgga tagctttgag acattcgttg      4320
     gaaaccagaa tatcttcacc taaaaactag acagaagcat tcccagaaac gtctttgtga      4380
     tgtttgcact aaactcacag agttgaacat tccttttcgt agagcagtat tgaaacactc      4440
     attttgtaga atctgtaagt ggaaacttat agtgctttga ggcctatgat gaaaaaggaa      4500
     atatcttccc ataaaaacta gacagaattc tcagaaactt ctttgtgatg tgtgtactga      4560
     actcatagag ttgaactctt cttttcatag agcagttttg aaagattctt tttgtagact      4620
     ctgcaagtgg atatttggat agctgtgagg cttttgttgg aaacgggaat atcttcacat      4680
     aaaactagac agaagaaatc tcagaaactt ctttgtgatg tttgcattca actcacagaa      4740
     ttgaacattc cctttcatag agcagttttg aaacactatt tttcttgtat ctggaagtgg      4800
     acatttggag acctttgatg cctgcattga aaaaggaaat atcttcacat aaaaagcaga      4860
     caaaagcatt ctcagaaact tccctttggt gggtttactc aagtcacagg gttgaacctt      4920
     cttt                                                                   4924
//


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