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EBI Dbfetch

ID   ABBA01009530; SV 1; linear; genomic DNA; WGS; HUM; 4703 BP.
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AC   ABBA01009530;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276988128, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-4703
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-4703
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 61acd15ada8e485c2d6580d3e66c3218.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212058.
DR   ENA-CON; DS486582.
DR   ENA-CON; KI270538.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..4703
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 4703 BP; 1390 A; 773 C; 1023 G; 1517 T; 0 other;
     cttttgagag cagttttgaa acagtctttt tgaagtatct gcaagtggat gtttggagag        60
     atttgaggcc taagatggaa aaggatatat cttcacctaa aaactaggca gaagcattct       120
     cagaaactgc tttgtgatgt ggggattcaa ctcacaggct tgaaactttc ttttgataca       180
     gcagggttca aacacacttt ttgtagaatc tgcaagtgtt catttggagt gctttcttgc       240
     ccatggtgga aaaagaaata tcttcacctg aaaactagac agaaactttc tcagaaaata       300
     ctttgtgatg tagttgttca attcacaggg ttgaaccttt ctttagataa agcagttttg       360
     aaacactgct tttgtagaat cttcttgtag atatttggag ctgtttgagg aattcgtttt       420
     aaacaggata tcttcacatt caaactagtc agaagcattc tcagaaactg gtttgtgatg       480
     tgtgcattct actcagagag atgaaccttc cttttgagag agcagttttg aaacaatctt       540
     tttgtattct ctacaagtgg aaacttggag caatgggagg actaagattg aagaggaaat       600
     atcttcacag ccaaacttga cagtagcttt ctcagaatct actttgtgat gtgtgcattc       660
     acctcacaga gtggaaccgt ccttttgata gagcagttct gaaacagtct ttttgtagga       720
     tctgcgagtg ttcattttag agcgctttta agcgtttggc ggaaaaggaa atatcttcac       780
     aaaaaactag acagaggcat gctcaggaac ttcactgaga tgtgtgcatt caagtaactg       840
     agttgaatct gccttttgat agagcagaat tgaaacactc cttttgtaga atctgcttgt       900
     ggatatttgg agctctttga ggaattcgtt gtaaacggga tatcttcaca tacaaactag       960
     acagaagcat tctcagtaac tgctttgtgg tgtgtgcatt caactcacag agttgaacct      1020
     tccttctgag agagcagttt ttaaacagtc tctttgaagt atctgcaagt ggatatttgg      1080
     agcgatggga agtctaagat tgaaaaggaa atatcctcac ttacaaacta gacagaagta      1140
     atctcattaa ctgctttgtg atgtgtgcat tcagctcaca gaattgaacc ttccttttga      1200
     gagagcagtt ttgaaacagt tttttgtagt atcctcaagt ggatatatgg agcgatgtga      1260
     ggcttaaggt ggaaacggga atatcttcac atacaaacta gatagaagca ttctcagaaa      1320
     ctgctttgtg atgggtgcat tcaactcaga gacttgaaca tttctttaga cggtgcagtg      1380
     ttgatacaca catttgtaga atctgcaaga gttcatttgg agcgctttga tgcctatggt      1440
     ggaaaaagaa atatcttcac ataaacacta aaaagaagcg ttctccgaaa ctcctttgtg      1500
     atatgtgtgt tcaattcaca gagttgaacc tttcttttga ttgagcagtt ttgaaacact      1560
     gcttttctag aatctgcttg tggatatttg gagctctttg aggaattcgc tgtcaatggg      1620
     atatcttcac acacaaacta gccagaagca ttctcagaaa ctgctttgtg atgtgtgcat      1680
     tcaacacacg gagttgaacc ttccttctga gagagcagtt ttggaacagt ctttttgtag      1740
     aatctgcaag tggatatttg gagcgatttg aggcctatga tggaaaagga aatatcttca      1800
     cataaaaaat agacagaagc attgtcagaa actggtttgt aatgtgcgca ttcaactcac      1860
     ggtcttgaac ctttcttttg atagagcagt gaggaaacac actttttgta gaatctgcaa      1920
     gtgttcattt ggagaggttt gttgcctatg ctggaaacag aaatatcttc acgcaaaaac      1980
     tagacagaag cagtctgaga aactgctttg tgttgtgtgc attcaacaca cagaattgaa      2040
     ccttcctttt gagagaggag ttttgagaca gtctttttgt aggatctgca agtgtatatt      2100
     tggagcgatt tgagtcctat gttgaaaagg aaatatcttc ccatacaaaa tagacagaag      2160
     cattctcaca aactgctttg tgatgtgtgc actcaggtca cagagtagaa ccattctttt      2220
     gatagagcag ttttaaaaca gtctttttgt aggatctgca agtgctgatt tggagcgctt      2280
     tgaagcctat gttggaaaag taaatatctt cacataaaaa ttagacagaa gcattctcag      2340
     gaacttcaat gagatgtgtg cattcaacca acggagttga atctgtcttt tgatagagca      2400
     gtattgaaaa actcatttcg tagaatctgc ttgtggatat ttggagctct tttaggaatt      2460
     cgttgtaagc gggatatctt ctcacactaa ttagacaaaa gcattctcag aaactgcttt      2520
     gtgatgtgtg cattcaacta accgagttgt accttccttt tgagatagcc attttgaaac      2580
     aatatttttg tagtatctgc aagtggatat ttgtagtcat ttgaggccta ggatggaaaa      2640
     ggatatactt tcacatacaa actagacaga aacattttca gaaacaggtt tctgttgtgt      2700
     gcattcaact cacggtattg aacatttctt ttgatagagc agtgatggaa cacacatttg      2760
     gagaatctgc aagtgttcat ttggagcgct ttgttgtcaa tggtggaaaa agaaatatct      2820
     ccacgcaaaa actagacaga agcattttca gaaactcctt tgtgatgtgt gtttttaatt      2880
     caaagaattg aacttttctt ttgattgagc acttttgaaa cactgcttct gtagaatctg      2940
     cttgtggata tttggaactc tctgaggaat tcgttgtaaa cgggatatct tcacatacag      3000
     actagacaga agcattctta gaaacttctt tgtgatgtgt gcattcaact cacagagtag      3060
     aaacttcctt ttgaaaaggc agctttgaaa ctgtcttttg gttgtatctg caagtggata      3120
     tttggagcga tttgtggtct atgatggaaa gggaagtatc ttcacataca aagtagacag      3180
     agccattctc agaaaatgct ttgtgatgtg ggcattcacc tcacagagtt gaaccttccc      3240
     tttgagagaa cagttttgaa actgtctttt tgtagtatct gcaagtggat atttgtagcg      3300
     atttgaggcc tatgatggaa aaggaaatat cttcacataa aaactagaga gaagcattcc      3360
     ctgaaactgc tttgtgatgt gtgcattcac ctcacggaat ggaaccgttc ttttgataga      3420
     gcagttttga agcagtctta ttgtaggatc tgcaagtatt catttggagc gctttgaagc      3480
     ctgtggtgga aatggaaata tcttcacata aaaactagac agaagcattc tcaggaactt      3540
     cattgagatg tgtgcattca actaacagag ttgaaagtgt cttttgacag agaagtatta      3600
     aaacactcct tttgtagaat ctccttgtgg gtatttggaa gactttgagg aatttgttga      3660
     aaacgggtat cttcacataa aaagtagatc catgcattct ccgaaagttc tttgtgatgt      3720
     gtgcattgaa ctcacagacc tgaacgtttc ttttgataga atagtgttga aacacacttt      3780
     ttgtagaatc tgcaattgtt catttggtgc actttgttgc ctatggtgga aaaagaaata      3840
     tcttccgata caaactagac agaagcattc tcagaaactg ctttgtgatt tgtgcattca      3900
     aatcacagag ttgaaccttc tttttgagag agaagttttg aaacagtctt tttgtggtat      3960
     ctgcaagtgg atcttaggaa cgatttgttg cctatggtgg ataaagaaat atcttcacat      4020
     aaatactaga cagaagcatt ctcagatctg tgtgtccttt tcaaaggaca ttctcagatc      4080
     tgtttgcctt tgtgatctgt gtgtccaatt caaagagttg aaactttctt ttgatagagc      4140
     agttttgaaa cactgctttt gcaggatctg cttgtggtta tttggagctc tttgaggaat      4200
     tcgttgtata cgggatatcc tcacatacaa actagacaga agaattctca gaaaatactt      4260
     tgtgatgtgt gcattcaact cacacagttg aactttcctt ttgagagaga ggttttgaaa      4320
     cagtctttct gtagtatctg caagtggata tttggagtga tttgaggcct aagatggaag      4380
     aggaaatatc ttcatataca aactagacag aagcattctc agaaactgct ttgtgatgtg      4440
     tgcgttcaac tcacagaatt caattttcct tttgagagaa ctgtgttgaa acactctttt      4500
     cgcggtaact gcaagtggat acttgcagtg attttaggcc tatgatggaa aaggaaatat      4560
     cttcacatac aaagtagatg gaagcattct cagaaagtgc tttgtgatgt cggcattcaa      4620
     ctcacagagt tgaaccttcc ctttgagaga gctgttttga aacagtcatt ttgcagtatc      4680
     tgcaagtgaa ttttggagcg att                                              4703
//


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