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EBI Dbfetch

ID   ABBA01009278; SV 1; linear; genomic DNA; WGS; HUM; 3920 BP.
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AC   ABBA01009278;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276988075, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-3920
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-3920
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; db34e0dc109a4afd499b5ec6aaae9754.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212189.
DR   ENA-CON; GJ212026.
DR   ENA-CON; KI270467.
DR   ENA-CON; GJ211989.
DR   ENA-CON; GJ212152.
DR   ENA-CON; DS489139.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..3920
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 3920 BP; 1224 A; 343 C; 608 G; 1745 T; 0 other;
     gaagcactat tagaaactac ttggtgatat ctgcattcaa gtcacagagt tgaacatccc        60
     cttactatga gcacgtttga aacactcttt tggtagaatc tggaagtgga catttggaac       120
     actttgatgc ctttggtgga aaggaaacgt cttcccataa aagcgagaga gaagcattct       180
     cagaaacttg tttgtgatgt gtgttctcaa ctaaaagagt tgaacctttc tattgataga       240
     gcagttttga aacactcttt ttgtggaatc tgcaagtgga tatttggatt gctttgagga       300
     tttcgttgga agcgggaatt catataaaat gtagacagca gaattctcag caatttcttt       360
     ctgatatttc cattcaacac atagagatga atattacctt tcataaagca ggtttgaaac       420
     acactttttg tagtatatgg aatggacaat ttgatcgctg tgtcgcctac agtgaaaaag       480
     gaaatatcct cccatagaaa gtagacagaa gcattctcag aaacttgttg gtgatatgtg       540
     tcctatacta acagagttga accttgctat tgatagagca gatttgaaac cctctttttg       600
     tggaatctgc aagtggatat ttggattgct gtgaggattt agttggaagc agggaattca       660
     tataatatat attttgatat tttttgttca gtatataata tatagtatgg gtactttgat       720
     attttatata cagcacataa tatatagttt tagtactttg atattttatg tacagttgat       780
     tataaatgtt tgggtacttt catattttat gtacagtata tgacacatat tttggttatt       840
     atggtatttt atatacagtg tataatatat attttgggtc ctttgatatt ttatgttcag       900
     tatataatat atattttggg tactttgata ttttatgtac agtatataat gtatatttgg       960
     ggtattttat attttaagta cagtatataa tatatattta gtgtactttg atattttatg      1020
     tacagaatac aatatatatt tgatgtaact tcatatttca tgtacactat ataatatgta      1080
     ctttgagtac tttgatattt tatgtacaat atataataca tactttgagt actttgatat      1140
     tttatgtgca gcatataata tatatttgat gtaccttcat atttcatgta caatttataa      1200
     aatatatttg gtgtaatttg atattttata tacagaatat aatatatatt tgatgtactt      1260
     tcatatttta tgtacagtat ataatacgta ttttgggtac tttgatattt tatgtacagt      1320
     acataatata tattttgggt atattgatat tttatttaca gtatacaata tatatttttg      1380
     ttactttgat attttatgta cactctataa tataaagttt gtgtactttg atattttatg      1440
     tacagtatat aatatatatt ttgggtactt tgatatttta tgtacagtat ataatatata      1500
     tttggggtag ttttatattt catgtacagt atataatata tatttggggt agttttatat      1560
     tttatgtaca gaatataata tatgtttgat tttccttcat attttatgta cagtatataa      1620
     tatatatttt gggaactttg ctgttttatg tacagtatat aatacatact ttgggtattt      1680
     gatagtttat ttaacgtata taatatatat tctgggtatt ttgatatttt aagtacagta      1740
     tatactatat agtatgggta ctttgatatc ttgtgtaccg cacataatat atagtttgag      1800
     tacattgata ttttatgtag agtttattat aaataatttg ttactttcat attttatgta      1860
     cagtatatga tatatatttt gggtattttg atattttttg tacggtatat aatatatact      1920
     ttgggtcctt tggtatttta tgtacagtat ataatacata ttttgtgtac tttgatattt      1980
     tatgtacagt atataatata tatttggggt attttatatt ttatgtacag tatataatat      2040
     ataatttggg tactttgata ttttatgtac agtatataat acatactttg ggtactttga      2100
     tattttatgt gcagcatata atatatattt gatgtacctt catattttat gtacagtata      2160
     taatatatat ttgggcaact ttaatatatt atgtacagca tataatatat atttggtgta      2220
     ctttgagatt ttatgtacag aatataatat atctttcatg taccttcata ttttatgtac      2280
     agtatacaat atatattttg ggtactttga tattttatgt acagtatgct atatattcgg      2340
     gtactttgat atattatgta cagtatataa tatacagttt gggtactttg acattttata      2400
     tactgtatat aatatgtagt ttgagtactt tgatatttta tgtacagttt attataaatg      2460
     gttactttca tattttatgt acagtatata atacatattt ttggtacttt gatattttat      2520
     gtacagtata taatatatat ttgatgtact ttgatatttt atgtgccgaa tataaaatat      2580
     atttgatgaa acttcatatt ttatgtacag tatataatat acactttggg tactttgata      2640
     ttttatgtac agtatataat gcataccttg ggtagtttga tattttatgt gcagcatgta      2700
     atatgaattt gaagtacctt catattttat atacagtata caatatatat ttgggggatt      2760
     taatatatta tgtacagtac acaatatcta ataggtgtag tttgatattt tatgtacagg      2820
     atataatata tatttgatgt accttcatat tttatggaca gtatatagta tatattttgg      2880
     gtactttgat attttatgta cagtatacaa tatatatttc aggtactgtg atattttata      2940
     tacactatat aataatacac agtttgggta ctttgatatt ttatgtacag tatatgatat      3000
     atagtttgag tactttgata ttttatgtac agtttattat aaatgttttg ttaatttcat      3060
     attttatgta cagtatataa tgcatatttt gggtactctg ataatttacg tacagtatat      3120
     aatacataat ttgggtactt tgatatttta tgtacagtat gtaatatata ttttgagtat      3180
     ttggatattt tatgtacagt atataatatt tattttgtgt cctttgatat tttatgtaca      3240
     gtatataata tgtattatgg gtactttgat attttatgta cagtatataa tatatatttg      3300
     gggtatttta tattttatgt acagtataca atatatattt tggctacttt gatattttat      3360
     gtacagttta caatatatat tttgggtact ttgatatttt atggacagta tataatacac      3420
     agtttgggta ctttggtatt ttatgtagag tttattataa atggttgggt actttcatat      3480
     tttatgtaca gtatataata catattttgg gaactttgct attttatgta cagtatataa      3540
     tacatacttt gtgtatttga tagtttatgt aacgtatata atatatattt tggatatttt      3600
     gatattttaa gtacagtata tactatatag tatgggtaat ttgatatgtt atgtaccgca      3660
     cataatatat agtttgagta cattgatatt ttatgtacag tttattataa atgtttgggt      3720
     actttcatat attatgtaca gtgtataata catattttgg ctactttgat attttttgta      3780
     cggtatataa tatatacttt gggtactttg gtattttatg tagagtatat aatatatatt      3840
     ttgggtattt tgatatttta tgtacagtat ataatatata ttttggggtc ctttgatatt      3900
     ttatgcacag tacataatac                                                  3920
//


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