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EBI Dbfetch

ID   ABBA01009019; SV 1; linear; genomic DNA; WGS; HUM; 1774 BP.
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AC   ABBA01009019;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276890696, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1774
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1774
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; bb1b2323414425c46531b3c3d22ae00d.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ211987.
DR   ENA-CON; GJ212187.
DR   ENA-CON; GJ212024.
DR   ENA-CON; KI270465.
DR   ENA-CON; GJ212150.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01009019.1:1-1774; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1774
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1774 BP; 575 A; 372 C; 293 G; 534 T; 0 other;
     ggaatgttca actctatgag ttgaatgcaa acatcacaaa gaaattctga gaatgctgct        60
     gtctaccttt tatttgaatt cccgcttcca acgaaaacct ccaagctatc caaatatcca       120
     cttgcagatt ccacaaaaag agtgtttcaa aactgctcta tcaatagaaa tgttcaactc       180
     ctttcgctgg gtacacacat cacaaacaag tttctgagaa agcttctgtc tagtttttat       240
     gggaagacat ttcctatttc accaaaggca tcaaagagct ccaaatgtcc acttccagat       300
     actacaaaaa gagtgtttaa aaagtgctct aagaaagcga atgttcaact ctgtgacttg       360
     aatgcagata tcacaaagta gtttctgaga gtgcttctgt ctagatttta catgatgata       420
     ttcccgtttc caacgaaatc attagagcta tccaaatatc cagttacagt ttctacaaaa       480
     agagtgtttc caaactgctg catcaaaaga gaggttccac tctgttagct gagtacacac       540
     atcacaaact tctttctgag aatccttctg tctaggtttt atgggaagat atttactttt       600
     tcaccgtagg catcaaagcg ttccaaatgt ccacctccag atagtaaaga aagagtgttt       660
     caaacctgct ctatgaaagg gaatgttcaa ctctatgagt tgaatgcaaa catcacaaag       720
     aaatttctga gaatgctgct gtctaccttt catttgaatt cccgattcca acgaaatcct       780
     ccaggctatc caaatatcca cttgcagatt ccacaaaaag agtgtttcta aactgctcta       840
     tcaatggcaa ggttcaactc tgtcagttga ggatacacat cacaaacaag tttctgagaa       900
     ttcttcattt tttttaaggt aggacatttc ctttttcacc gtaggcgtca aagcgatcga       960
     aatgtcttca tccatacaat acaaaaagtg tgtttcaaac ctgctctatg aatgggaatg      1020
     ttcatctcta tgtgctgaat ggaaatatca gaaagaaatt tctgagaatg ctgctacatt      1080
     tttatgaatt cccgctgcca acgaaatcct caaagcaatc caaatatcca cttgcagatt      1140
     ccacaaaaag agtgtttcaa aactgctcta tcaatagaaa ggttcaactc ttttagttga      1200
     gtacacacat cacatacaag tttctgagaa agcttctgtc tactttttaa gggaagacat      1260
     ttcctttttc accaaaggca tcaaagcgct ccaaatgtcc actttcagat tctacaaaaa      1320
     gagtgtttca aacctgctct aagtaaggga gttttcaact ctgtgactgg aatgcagata      1380
     tcacaaagta gtttctgaga ctgcttctgt gtatacttta gatgaagata ttcccgtttc      1440
     caatgatatc gttagaccta accaaatatc cacttacagt ttctacaaaa agagtgtttc      1500
     caaactgctg catcaaaaga aaggttcagc tctgttagtt gaggacacac atcacaaaga      1560
     agtttctgag aaagcttctg tctagatttt gtatgaagat attccctttt ccaacgatgt      1620
     cgttaaatca acccaaatat caatttgcag aatccacaga aatagagttt caaagctgct      1680
     ctgtaaaaag aaaggatcca ctctgttagc tgagtacaca catcacaaac ttgtttctga      1740
     gaatccttct gtctagtttt tatgggaaga tatt                                  1774
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