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EBI Dbfetch

ID   ABBA01008567; SV 1; linear; genomic DNA; WGS; HUM; 1942 BP.
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AC   ABBA01008567;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276884383, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-1942
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-1942
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 2cb746c78e0faa11e628603a4bc9bd58.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270303.
DR   ENA-CON; GJ211839.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01008567.1:1-1942; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1942
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 1942 BP; 623 A; 414 C; 352 G; 553 T; 0 other;
     gaaggcctca aggatgtcag aatatccact tgcaaacttt acaaacagag tgtttcctaa        60
     ctgctctgtg aaaagaaagg ttaaactctg tgagttgaac gcacacatca caaaggagtt       120
     tctgagaatc attctgtctt gtttctatac gaagatattt cctttgctac cattgacccc       180
     aaagcggctg aaatctccac ttggaaattc cacaaaaagt gtgtttcaag tctgctctgt       240
     gtaaaggatc attcaactct gtgagttgaa tacacacaac acaaggaagt ttctgagaat       300
     tcttctgtct agcagaatat gaagaaatcc cgtttccaac gaaagcctca aagaggtctg       360
     aatatccaat tgcagacttt acaaacagag tgtttcctaa ctgctctatg aacagaaagg       420
     ttaaactctg tgagttgaac gaacacatca caacgcagtt tgagggaatg attctgtcta       480
     gttttgaaac gaagatattt ccttttctgc cattgacctt aaagcgcttg aaatctacac       540
     ttgcaaattg cacaaataga gtgtttcaaa tctgctctgt ctaagggaac gttcaactct       600
     gtgagttgaa tgcacacaac acaatgaagt tactgggaat tcttctgcct agcattacat       660
     gaaaaaaacc cgtttccaac gaaggcctct aagtggtcaa aatatccacg tgcagacttt       720
     acaaacagag tgtttccaaa ctgctgaatg aaaagaaaag ttaaacactg agagttgaac       780
     gcacacatca cagtgcagtt tctgaggatg attctgtcta gtttttatac gaagatattt       840
     ccttttctgc ctttggccca aaagcgcttg taatctccac ttgcaaattc cacaaaaata       900
     gtgtttcaaa tctgctctct ctaaatgaaa gttcaactct gtcagttgaa tacacacaac       960
     acaaggaagt tactgagaat tcttctgtct agccttacat gaaaaaaacc catttccaac      1020
     gaaggtctca aagaagtcca agtatccacg tgcagactat acaaacagag tgtttcctaa      1080
     ctgctctatg aaaagaaagg ttaaactctg ggagttcaac gcccacatca caaaggagtt      1140
     tctgagaatc attctgtcta gtttttatac gaagatattt cctcttctac cattgacctc      1200
     aaagcggctg aaatctccac ctgcaaattc cacaaaaaga gtgtttcaag tctgctctgt      1260
     gtaaaggatc gttcaactct gtgagttgaa tacacacaac acaaggaagt tactgagaat      1320
     tcttctgtct agcagaatat gaagaaatcc cgtttccaac gaaggcctca aaggggtctg      1380
     aatatccact tgcagacttt ataaacagag tgtttcctaa ctgctctatg aaaagaaagg      1440
     ttaaactctg tgagttgaac gctcacaaca caaaggagtt tctgagaatc attctgtcta      1500
     gtttctatac gaagatattt ccttttctac tattgacctc aaagcggctg aaatctcccc      1560
     ttgcaaattc cacaaaaaga gtgtttcaag tctgctctgt gtaaaggatc gttcaactct      1620
     gtgagttgaa tacacacaac gcaaggaagt tactgagaat tcttctgtct agcagaatat      1680
     taagaaatcc cgtttccaac ggaggcctca aggaggtctg aatatccact tgcagacttt      1740
     acaaacagag tgtttcctaa ctgctccatg aaaagaaagg taaaactctg tgagttgaac      1800
     gcacacatca caaaggagtt tctgagaatc attctgtctt gtttctatac gaagatattt      1860
     cctttttcta ctattgacct caaagcgtct gaaatctcca cttgcaaatt ccacaaaaag      1920
     agtgtttcaa gtctgctctg tg                                               1942
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