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EBI Dbfetch

ID   ABBA01008533; SV 1; linear; genomic DNA; WGS; HUM; 2646 BP.
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AC   ABBA01008533;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276883538, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2646
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2646
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; fc240322d91d43c04f349cc58fda3eca.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270411.
DR   ENA-CON; GJ211934.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2646
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2646 BP; 902 A; 536 C; 461 G; 747 T; 0 other;
     gagttgaggc acacatcaca aactagtttc tgcgaatgac tctgtgtact tttaatacga        60
     agatatttcc atctctaaga taggcgtcaa atctcttgaa atctccacct ggaaattcca       120
     caaaaagagt gtttcaaaac tgctctgaat aaaggaaggt tccactctgt gagttgaata       180
     caaacaacac aaagaagtta ctgagaattc ttctgtctag cattatatga ggaaatcccg       240
     tttccaacga agggctcaaa gagggccaat tatccacctg cagacttaca aagagtgtat       300
     ttccaaactg ctcgattaaa gaaaggttaa actctgtgag ttgaacacac acatcacaaa       360
     gtgttttctg agaatgattt tgtctagttt taatacgaag atatatcctt ttctatcact       420
     gtcttcgaag cgtttgaaat ctgcactagc aaattccaca aaaagtgttt caactctgct       480
     ctctctaaag aaacgttcaa ctctgtgagt tgaatacaca caacacaaag aagctactga       540
     gaattcttct gtctagcgtt atatgaagaa atcccttttc caacgaagga atcaaagagg       600
     tccaaatatc cagttgcaga ctttacaaat agagtgtttc caaactgctc tatgaaaaga       660
     aaggttaaac tctgtgagtt gaaggcacac atcacaaact agtttctacg aatgactctg       720
     tgtactttta atatgaagat atttccatgt ctaagattgg cgtcaaatct cttgaaatct       780
     ccacttgcaa attccacaaa aagagtgttt caaaactgct ctgaataaag gaaggttcca       840
     ctctgtgagt tgaatacaca caacacaaag gatttactga gaattcttct gtctagcagt       900
     aaatgagaca tcccgcttcc aacgaaggcc tcaaagaggt ctaactaatc acttgcagac       960
     tttacagaca gagtctttcc aaactgctct atgaagagaa aagtgaaagt ctgtgaactg      1020
     aacgcacaga taacaaagca gtttctgaga atgattctgt gtagttttta tacgaagata      1080
     tttccatttc aaagattagc ctcaaatcgc ttgaaatctc cacttgcaaa ttccacagaa      1140
     agaatttttc aaaactgctc tgtctaaagg aaggttcaac tctgttactt gaatacacac      1200
     aacacaaaga agtgattgag aattcttctg tctagcatta tatgaagaaa tcccgtttcc      1260
     aacgaaggcc tcaatgaagt ctaaaaaagc acttgcaggc tttacaaaca gagtgtttcc      1320
     aaactgctct ataaaaagaa aggttaaact ctgtgagttg aacgcacaca tcacaaagta      1380
     gttgttgaga atgattctgt gtagttttta tacgaagata tttccttttc tgccataggc      1440
     ctagaagcgc atgaaatctg cacttgcaaa ttccaaaaac agagtgtctc aaatctgctc      1500
     tctctaaagg aaggttcaaa tctgtgggtt gaatactaac aacacaaaga agttactgag      1560
     aattcttctg tctagcatta tatgaggaaa tcccgtttcc aacgaagggc tcaaagaggg      1620
     ccaattatcc acctacagac ttacaaagag tgtatttcca aactgctcga ttaaagaaat      1680
     gttaaactct gtgagttgaa cacacacatc acaaagagtt ttctgagaat gattttgtct      1740
     agttttaatg cgaagatata tccttttcta tcactgtctt cgaagctttt gaaatctgca      1800
     ctagcaaatt ccacaaaaag agtgtttcac ctctgctctc tctcaagaaa ggttcaactc      1860
     tgtgagttga atacacataa cacaaagaag ttactgagaa ttcttctgtc tagcgttata      1920
     tgaagaaatc ccgttaccaa cgaaggcctc aaagaggtcc aaatatccac ttgcagattt      1980
     tacaaataga gtgtttccaa actgctttat gaaaagaaag gttaaactct gtgagctgaa      2040
     ggcacacttc acaaactagt ttctacgaat gactctgtgt acttttaata tgaagatatt      2100
     tccatgtcta agattggcgt caaatcgctt gaaatctcca cttgcaaatt ccacaaaaag      2160
     agtgtttcaa aactgctctg aataaaggaa gtttccactc tgtgagttga atacacacaa      2220
     cacaaaggat ttactgagaa ttcttctgtc tagcagtaaa tgagaaatcc ctcttccaac      2280
     gaagacctca aaggggtcta actaatcact tgcagacttt acagacagag tctttccaaa      2340
     ctgctctatg aacagaaagg tgaaactctg tgaactgaac gcacagataa caaagcagtg      2400
     tctgagaatg attctgtgta gtttttacac gaagatattt ccatttcaaa gattagcctc      2460
     aaatcgcttg aaatctccac ttgcaaattc cacagaaaga atttctcaaa actgctctgt      2520
     ctaaaggaag gttcaactct gtgacttaga tacacaccac acaagaagtg actgagaatt      2580
     cttctgccta gcattatatg aagaaatcac gtttccaacg aacgcttcaa agaggtccaa      2640
     atatgc                                                                 2646
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