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EBI Dbfetch

ID   ABBA01008080; SV 1; linear; genomic DNA; WGS; HUM; 2276 BP.
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AC   ABBA01008080;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276879447, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2276
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2276
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; ecc43e822dc011fae1fcfd9981c46e9c.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270315.
DR   ENA-CON; GJ211897.
DR   ENA-CON; GJ212145.
DR   ENA-CON; GJ212182.
DR   ENA-CON; GJ212019.
DR   ENA-CON; GJ211851.
DR   ENA-CON; GJ211982.
DR   ENA-CON; GJ212086.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2276
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2276 BP; 665 A; 402 C; 469 G; 740 T; 0 other;
     tgtgtgtatt cactctgtga gttgaatcct ttacacagag cagacttgaa acactctttt        60
     tgtggaattt gcaagtggag atttcagccg ctttgaagtc aaaggtagaa aaggaaatat       120
     cttcgtataa aaactagaca gaatgattct cagaaactcc tttgtgatgt gtgcgttcaa       180
     ctcacagagt ttaacctttc ttttaataga gcagttagga aacactctgt ttgtaaagtc       240
     tgcaagtgga tattcagacc tctttgaggc cttcgttgga aacgggtttt tttcatataa       300
     ggctagacag aagaattccc agtaacttcc ttgtgttttg tgtattcaac tgacagagtt       360
     gaactttcat ttacacagag cagatttgaa acactctttt tgtggtattt gcaagtggag       420
     atttcagccg ctttgatgtc aatgatagaa aaggaaatat cttcatataa aaactagaca       480
     gaatgattct cagaatctcc tttgtgatgt gtgtgttcaa cttacagagt ttaacctttc       540
     ttttcataga gcatgtagga aacactctgt ttgtaaagtc tgcatgtgga tattttgacc       600
     tcttttaggc cttcgatgga aacgggtttt tttcatgtaa ggctagacag aagaattcgc       660
     agtaacttcc ttgtgttgtg tgtattcaac tgacagagtt gaacttacat ttagacagag       720
     cagattagaa aaactcttta tgtggaattt tcaagtggag atttcaagcg cgttgaggcc       780
     aaaggcagaa aaggaaatat cttcgtataa aaactagaca gaatcattcc ctcaaactgc       840
     gttgtgatgt gttcgatcaa ctcacggagt ttaacctttc ttttcataca gcagttagga       900
     aacactctgt ttgtaaagtc tgtaagtgga tatgctgaca tcttgtggcc ttcgttggaa       960
     acgagatgtc ttcatattct gctagacaga agaattctca gtaacttcct tgtgttgtgt      1020
     gtattcaact cacagagttg aacgatcctt tacacagagc agatttgaaa cactcttttt      1080
     gtggaatttg caagtggaga tttcagccgc tttgaggtca atggcagaaa aggaaatatc      1140
     ttcttttaaa aactagacag aatgattctc agtaagttct ttgtgatgtg tgcgttaaac      1200
     tcacagggat taacctttct tttcatagag cagttaggaa acactctgtt tgtaaagtct      1260
     gcaagtggat attcagacct ccttgaggcc ctcgttggaa acgggattta ttcaaattat      1320
     gctagacaga agaattctca gtaacttcct tgtgttgtgt gtattcaact cacagagttg      1380
     aacgatcctt tacacagagc agattagaaa cactcttttt ctcgaatttg caggtagaga      1440
     tttcagccgc tttgcggtca atagtagaaa agggaatatc ttcgtataaa aactagacag      1500
     aatcattctc agaaactgct cggcgatgtg tgcgttcaac tttcagagtt taacttttct      1560
     tttcattcag cagtttggaa acactctgtt tgtaatgtct gcacgtggat attttgacct      1620
     cttagaggcc ttcgttggaa acgggttttt ttcatgtaag gctagacaga aaaattccca      1680
     gtaacttccg tgtgttgtgt gcattcaact cacagagttg aacgttccct tagacagagc      1740
     agatttgaaa aactcctttt gtgcaatttg gaattggaga tttcaagcgc tttaatgtca      1800
     atggcagaaa agaaaatacc ttcgtttcaa aactagacag aatcattccc acaaactgcg      1860
     ttgtgatgtg tacgttcaac tcacagaact taacctttct ttacatagag cagttaggaa      1920
     acagtctgtt tgtaaactct gcaagtggat atacagacct ctttgaggcc ttcgttggaa      1980
     acgggatttc ttcatactat gctagacaga agaattctca gtaacttcct tgtgttgtgt      2040
     gtattcaact cacagagttg aatgatcctt tacacagagc agacttgaaa cactcttttt      2100
     gtggaatttg caagtggaga tttcagccgc tttgaagtca aaggtagaaa aggaaatatc      2160
     ttcgtattaa aactagacag aatgattctc agaaactcct ttgtgatgtg tgcgttcaac      2220
     tcacagagtt taacctttct tttcatagag cagttaggaa acactctgtt tgtaaa          2276
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