spacer

EBI Dbfetch

ID   ABBA01007468; SV 1; linear; genomic DNA; WGS; HUM; 1578 BP.
XX
AC   ABBA01007468;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276957803, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1578
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1578
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; ec1e8c905d8f566a4ae295fca2f9c81f.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; GJ212015.
DR   ENA-CON; GJ212141.
DR   ENA-CON; GJ211894.
DR   ENA-CON; GJ211847.
DR   ENA-CON; DS490533.
DR   ENA-CON; GJ211978.
DR   ENA-CON; GJ212178.
DR   ENA-CON; GJ212083.
DR   ENA-CON; KI270311.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1578
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1578 BP; 523 A; 337 C; 264 G; 454 T; 0 other;
     ggtctgatat ccactgcaga cttacaaaca gagtgttcct aactgctcta taaaagaaag        60
     ggtaaactct gtgagtgaac gcacacatca caaagcagtt tctgagaatc attctgtcta       120
     gtttctatac gaagatattt cctattctac cattgacatc aaagcggcag aaatctccac       180
     gtgtaaattc cacaaaaaga gtatttcaag tctgctctgt gtaaaggatc cttcaactct       240
     gtgagttgaa tacacacaac acaaggaagt tactgagaat tcttctgtgt agcataatat       300
     gaagaaatcc cgtttccaaa gaaggcctca aatatgtctg aatatccact tgcagacgtt       360
     acaaacagag tgtttcctaa ctgctctatg aaaagaacgg ttaaactctg tgagttaaat       420
     gcccacataa caaaggagtt tctgacaatc attctgtcta gttttcatac gaagatattt       480
     ctttttctac cattgaactc aaaggggctg aaacctccac ttgcaaattc cgcaaaaaga       540
     gtgtttcaac tctgctcttt gtaaaggatc attcaactct gtgagttgaa tacacacaac       600
     acaaggaagt tactgagaat tcttctgtct agcataatat gaagaaatcc cttttccaac       660
     gaaggcctca aagaggtctg aatatccatt tgcagagttt acaaacatag tgtttccaaa       720
     ctgctgaatg aaaagaaaag ttaaactctg agagttgaac gcacacatca cagaacagtt       780
     tctgagaatg attctgtcta gtttttatac gaagatattt ccttttctgc ctttggcccc       840
     aaagcgcttg aaatctccac ttgcaaattg cacaaaaata gtgtttcaaa tctgctctgt       900
     ctaaatgaaa cttcaactct gtcagttgaa tacacacaac acaaggaagt tactgagatt       960
     tcttctgtct agccttacat gaaaaaaacc cgtttccaac aaaggcctca aagatgtcga      1020
     aatatccacc tgcagacttt acaaaccgag tgtttcctaa ctgctctatg aaaagaaagg      1080
     ttaaactctg tgagttgaac gcccacatca caaaggtgtt tctgagaatc attctgtcta      1140
     gtttttatac gaagatattt ccttttctac cattgacttc aaaacggctg aaatctccac      1200
     ttgcaaattc cacaaaaagt gtgtttcaag tctgctctgt gtaaaggatc attcaacact      1260
     gtgagttgaa tacccgcaac acaaggaagt tactgagaat tcctctgtct aacagaatat      1320
     gaagaaatcc cgtttacaac gaaggcctca aaaaggtctg aatatccact tgcagacctt      1380
     acaaacagag tgtttcctaa ctgctctatg aaaagaaacg ttaaactctg tgagttgaac      1440
     gcacacctca caaaggagtt tctcagaatc attctatcta gtttttatac gaagatattt      1500
     cctattctac cattgaacta aaagcggctg aaatctccac ttgcaaattc cacaaaaaga      1560
     gtgtttaaag tctgctct                                                    1578
//


spacer
spacer