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EBI Dbfetch

ID   ABBA01005055; SV 1; linear; genomic DNA; WGS; HUM; 2501 BP.
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AC   ABBA01005055;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279029522, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2501
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2501
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 6d40a46f75fa7594413058b6652558c5.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; DS486890.
DR   ENA-CON; GJ211858.
DR   ENA-CON; KI270322.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2501
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2501 BP; 741 A; 566 C; 494 G; 700 T; 0 other;
     aacggctctc caaagggaat gttcaactct gtgacttgaa aagaaatcat caaaatgtag        60
     tttcggagaa tgcttccatc tatcttttat gagtagatat ttccttttct accacaggcc       120
     tcgaagccct cccaatgtcc acttgcagat tctagagaga gagggtttca aagctgctct       180
     atcaaaagga aagtacaaca ctgggagttg aatgcaaaca tcacaaagaa gtctctgagc       240
     atgcttccat ttagctttta tgggaagatt atcccttttc catcgaaatc ttccaagagc       300
     tccaagtatc cgcttgcagg tccctctgat agagtgtttc caagcggctg tatcaaaagg       360
     agccttccac tccgtgagat gaatgcagtc atcacaaaga agaagtttct gacaatgctt       420
     ctctctagtt tttatgtgaa gatatttcct tttccaccac aggcctgaaa gcgctccaaa       480
     tgtccacttg gagactctac gaaaagaatg tttcaaaact gttctatgaa aagcaaggtt       540
     aaactctggg agttgaacac atgcctcaca aagaagtttc tgagaaggca tctgtttact       600
     ctttatgtga agatattccc gtttgcaaag aaatcttcac agagttccac ctatccatgt       660
     gcagattcta gagaaacaga gtttcgaaac ttctctatcc aaaggaatgt tcaactctct       720
     aagttgaatg caatcatcac agagaggttc ctgagaaggc ttctgtctgg attttatgtg       780
     aagatatacc cgtttcgaac gaaggacaca aagtgctcca aatatccact agcagatcct       840
     acaaaaagag tgtttcaaac gtgagctatc gaaggaaggt tcaactctgg actttgaatg       900
     caaacgtccc aaagaagttt ctgcgaaagc ttctgtttag ttaggtgacg ttatcccgtt       960
     tccaacgaaa tcctcaggga ggtccaactg tccacttgca gattctacaa aaagtgtgtt      1020
     tcaaagctgc tccatccaaa ggaatgttcc gctctgtgag ttcaactcaa tcatctcgaa      1080
     gtattttctg cgaatgcttc tgtccagttt ttaaaagaag ctatttcctt tactaccgta      1140
     ggcctcaaag cgttccatat ctccacttgc agatactacg aaaggagtgt ttcaacttga      1200
     actcacaagg gaatgttcaa ccacgtgagt tgaatgccaa catcacgaag aagtttctga      1260
     gaatgcttct gtttagttct gtgaggtttt cccctttcca acgaaatcca cagagaaatc      1320
     caaacaccca ctggcagatt ctacaaaaag tgtgtttcga aactgctcca tccaaaacaa      1380
     tgttcagctc tgtgggttga actcaatcgt cacaaagtgt ttcctgagaa tgctgctgtc      1440
     tagtttttat gggcagtgct ttcctctact gccataggcc tcaaagcggt ccaaatctcc      1500
     ccttgccgat tctaccaaaa gtgtgtctcc aaacggctct atcaaaggga atgctcaact      1560
     ctgtgacctg aaagcagtca tcacaaagta gtttctgaga atgcttccgt ctaggtttta      1620
     tgagtagata tttccttttc caccacaggc ctcgaagccc tccaaatgtc cacttgcaga      1680
     ttctagaaag agagggtttc aaagctgctc tatcgaaagg aaagtacaac tctgtgagtt      1740
     gaatgcaaac atcaccaaga aggctctgag cacgcttccg tttagctttt atgggaagat      1800
     tatccctttt ccatcgaaat ctccaaagag gtccaaatac ccgcttgcag gtcccactga      1860
     aagcgtgctt ccaaactgct gtatcaaaag gaaccttcaa ctacgtgagt tgaatgccat      1920
     catcacaaag acgtttctga caatgcttct ctctagtttt gaggtgaaga tatttccttt      1980
     tccaccacag gcctgaaagc gctccaaacg tccacttgga gactctacga aaagaatgtt      2040
     tcaaaactgc tctatgaaaa gcaaggttga agtctgggag ttgaacacat gcctcacaaa      2100
     ggagtttctg agaaggcatc tgtttactct ttaagtgaag atattcccgt ttccaaggaa      2160
     atcttcacag agttccacct atccatgtgc agattctaga aaaaagagag tttcgaaact      2220
     tctctatcca aaggaatgtt caactctgtg agttggatgc aatcatcaca gagaagtttc      2280
     tgagaaggct tctgtctgga ttttatgtga agatataccc atttcgaacg aaggccacaa      2340
     agtgctccca atatccactt gcagatccta caaaaagggt gtttcaaacg tgaactgtca      2400
     aagggagttt caactctgga ctttgaatgc aaacgtcaca aagaagattc tgcaaaagct      2460
     tctgtttagt taggtgacgt tatcccgttt caaacgaaat c                          2501
//


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