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EBI Dbfetch

ID   ABBA01004590; SV 1; linear; genomic DNA; WGS; HUM; 2699 BP.
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AC   ABBA01004590;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103276839861, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2699
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2699
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 57baf650c47bba9b3a8b7c6d0fb55ad6.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270333.
DR   ENA-CON; GJ211872.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01004590.1:1-2699; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2699
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2699 BP; 1218 A; 381 C; 269 G; 831 T; 0 other;
     caaagtgtgt attatatact gtacataaaa tatcaaagta cccaaagtat atattacata        60
     ctgtacataa aatatcaaag ttcccaaatt gggtattata tactgtacat aaaatatcaa       120
     agtacccaat gtatgtatta tatactgtac ataaaataaa agtacccaag gtatgtatta       180
     tatactgtac ataaaatatg aaagtaccca aacacttata ataaactcta cataaaattt       240
     caaagtagtc aatctatata ctgtacatga aatatcaaag taccaatact atatattgta       300
     taccgtacat aaaatcacaa agtacccaaa ctatatatta tatactgtac ataaaatatg       360
     aaagtaccca aagtatgtat tatatactgt acataaaata tcaaagtacc caaagtatgt       420
     attatatact gtacataaaa taagaaagta cccaaagtat gcattatata ctgtacataa       480
     aatatcaaag tacacaaagt atgcatttta tactgtacat aaaatatcaa agtacccaag       540
     tatgtattat atactgtaca taaaatatca aagtacccaa agtatgtatt atatactgta       600
     tataaaatat caaagaggcc aaagtatgta ttatatactg tacataaaat atcaaagtac       660
     ccaaagtatg tattgtatac tgtacataaa atatcatagt gccaaagtat gtattatata       720
     ctgtacataa aatatgaaag tacgcaaaca tttataataa actgtacata agatatcaaa       780
     gcactcaaac gatatactgc acataaaata tcaaagtacc aaaactatat attttatact       840
     ggacataaaa tataaaagta ctcaaactat atactgtaca taaaatatca aagtacccaa       900
     agtatgtatt atatactgta cataaaatat caaagtaccc aaagtatgta ttgtatactg       960
     tacataaaat atcatagtgc ccaaagtatg tattatatac tgtacataaa atatgaaagt      1020
     acgcaaacat ttataataaa ctgtacataa aatatcaaag tactcaaatg atatactgca      1080
     cataaaatat caaagtacca aaactatata ttttatactg gacataaaat atcaaagtac      1140
     tcaaactaaa tattgtatac tgtacataaa atataaaagt acccaaagta tgtattatat      1200
     actgtacata aaatatcaaa gtacccaaaa tatgtatttt aagttgaaga taaaatatca      1260
     aagtacccaa actatatatt atatactgta cataaaattt gaaagtacca aagtatgtat      1320
     tatatactgt acataaaata tgaaagtacc ctaagtatgt attatatact gtacataaaa      1380
     tatcaaagtg cccaaagtat atattacata ctgtacataa aatatcaaag tacccaaatt      1440
     gtgtattata tactgtacat aaaatatcaa tgtacccaaa gtatgtatta tatactgtac      1500
     ataaaatatc aaattaccca aagtatgtat tgtatactgt acataaaata tcaaagggcc      1560
     caaagtatgt attatatact gtacataaaa tataaaagta cccaaattat gtattatata      1620
     ctgtacataa aatatcaaag tacccaaagt atgtattata tactgtacat aaaatatcaa      1680
     agtacccaaa gtacatatta tatactgtac ataatatatc aaagtaccca aagtatgtat      1740
     tatatactgt acataatata tcaaagtacg caaagtatgt attatctaca gtacacaaaa      1800
     tataaaacta cgcaaagtag gtattatata cggtacataa agtatcaaag cacacaaatt      1860
     atgtattata tactgtatat aaaatatcaa agtacccaaa ttatgtatta tatagtgtac      1920
     ataatatatc aaagtaccca aatatgtatt gtatactgta cacaaaatat caaagtctcc      1980
     aacgtatgta ttatatactg tacgtaaaat atgaaagtag ccaaacattt ataataaact      2040
     gtacataaaa tatcaaagta ctcaaactat atactgtata taaaatatca aagtaccaaa      2100
     actatatatt ttatactgga cataaaatat ccaattactc aaagtatgta ttgtatactg      2160
     tacataaaat atcaaagtac acaaagtatg cattatatac tgtacataaa atatcaaaga      2220
     acccaaagta tgtattgtat actgtacata aaatatcaaa gtacccaaag tatgtatggt      2280
     atactgtaca taaaatatca aagtgcccat aggatgtatt atatactgta cataatatat      2340
     caaagtaccc aaagtaggta ttatatagtc tacataatat atcaaagtac gcaaagtatg      2400
     tattatatac tgtacataaa atataaaact acccaaagta tgtattatat actgtacata      2460
     aaatataaaa gtacccaaag tatgtattat atactgtaca taaaatatca aagaacccaa      2520
     tttatgtatt ttatactgta cataaaatac caaagtgccc aaattatgta ttatatactg      2580
     tacataaaat aggaaagtac ctaaacattt ataataaagt gtacataaaa tatcaaagta      2640
     cccaaattat gtattatata ctgtacataa tatatcaaag tacccaaagt atgtattgt       2699
//


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