spacer

EBI Dbfetch

ID   ABBA01003973; SV 1; linear; genomic DNA; WGS; HUM; 1672 BP.
XX
AC   ABBA01003973;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103279004564, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-1672
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-1672
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 018a416184b6073205a1304d208be001.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270317.
DR   ENA-CON; GJ212184.
DR   ENA-CON; GJ212021.
DR   ENA-CON; GJ211853.
DR   ENA-CON; GJ211984.
DR   ENA-CON; GJ211899.
DR   ENA-CON; DS486745.
DR   ENA-CON; GJ212088.
DR   ENA-CON; GJ212147.
DR   BioSample; SAMN02981236.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1672
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 1672 BP; 551 A; 356 C; 290 G; 475 T; 0 other;
     tctgtctagc attacatgaa aaaacccgtt tccaacgaag gctcaaagag gttaaaatac        60
     ccacttgcag actttacaga gtgtttccta acagctctat gaaaagaaag ttaaactctg       120
     tgagttgaac acccacatca caaaggagtt tctgagaatc attctgtcta atttttatat       180
     gaagatattt ccttttcaac cattgacctc aaagtggctg aaatctccat ttgcaaattc       240
     cacaaaaaga gtgtttcaag tctgctcaaa ggatcgttca actctgtgag ttgaatacac       300
     acaacacaag gaagttgctg agaattcttc tgtcaggcat aatatgaaga aatcccgttt       360
     gcaacgaagg cctcaaagag gtctgaatat ccacttgcag actttacaaa cagagtgttt       420
     cctaactgct ctatgaaaag aaaggttaaa ctctgtgagt tgaacgcaca catcataaag       480
     cagtttctga gaatcattct gtctagtttt tattcgaaga tatttcgttt tctaccattg       540
     acctcaaagc ggctgaaatc tccacttgca aattccacaa aaagagtgtt tcaattctgc       600
     tctctgtaaa ccatcgttca actctgtgag ttgaatacac acaacacaag gaagattctg       660
     agaattcttc tgtctagcag aatatgaaga aatcccgttt ccaacgaagg ccacaagatt       720
     tcagaatatc cacttacaga atttacaaac agagtgtttc ctaactgctc tatgaaaaga       780
     aaggttaaac tctgtgagtt gaacgaacac atcacaacgc agtttgtggg aatcattctg       840
     tctacttttg aaacgaagat atttcctttt ctgccagtga ccttaaagcg cttgaaatct       900
     ccacttgtca attgcacaaa aagagtgttt caaatctgct ctgtctaagg gaacgttcaa       960
     ctctgtgagt tgaatgtact caacacaagg aagttactgg gaattattct gtctagccct      1020
     acatgacaaa aacccgtttc caacgaaggc ctctatgtgg tcaaattatc cacgtgcaga      1080
     cttttcaaac agagtgtttc caaactgctg aatgaaaagg aaagttaaac tctgagagtt      1140
     gaacgcacac atcacagagc agtttctgag aatcattctg tctagttttt atacgaagat      1200
     atttcctttt cggcctttgg cctcaaagcg cttgaaatct ccacttgcaa attccacaaa      1260
     aagagtgttt caaatctgct ctgtctaaat gaaagttcaa ctctgtcagt tgaatacaca      1320
     caacaaaagc aagttactga gaattcttct gtctagcctt acatgaaaaa aacccgtttc      1380
     caacgaaggc ctcaaagagg ttaaaatacc cacttgcaga ctttacagag tgttcctaac      1440
     agctctatga aaagaaagtt aaactctgtg agttgaacac ccacatcaca aaggagtttc      1500
     tgagaatcat tctgtctaat ttttatatga agatattccc tttacaacca ttgacctcaa      1560
     agcggctgaa atctccactt gcaaattcca caaaaagagt gtttcaagtc tgctcaaagg      1620
     atcgttcaac tctgtgagtt gaatacacac aacacaagga agtgctgaga at              1672
//


spacer
spacer