spacer

EBI Dbfetch

ID   ABBA01001870; SV 1; linear; genomic DNA; WGS; HUM; 2387 BP.
XX
AC   ABBA01001870;
XX
PR   Project:PRJNA19621;
XX
DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
XX
DE   Homo sapiens CTG_1103276810589, whole genome shotgun sequence.
XX
KW   WGS.
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2387
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
XX
RN   [2]
RP   1-2387
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
XX
DR   MD5; 7a64d89ea14990c16d20f4d6e7283e10.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270390.
DR   ENA-CON; GJ211918.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01001870.1:1-2387; homo_sapiens.
XX
CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2387
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
XX
SQ   Sequence 2387 BP; 739 A; 406 C; 477 G; 765 T; 0 other;
     taacagagat gaacctttct ttttacagag cagttttgaa acactctttt tgtggaatct        60
     gaaagtggat atttggatag ctttgaggat ttcattgaaa acgggattac atataaaatc       120
     tagagagaag cattctcagg aacatctttg tgatgtttgc attcacgtca cagaactgaa       180
     cattcccttt catagagcat gtttgaaaca ctctttctgt agtatctgca aacggacatt       240
     tcaaacactt tcaggcctat ggtgagaaag gaaatatatt caaataaaaa ctagacagaa       300
     gcattctcag aaacttattt gcgatgtgtg tcctcaacta acagagttga acctttcttt       360
     tgatacaaca ttttggaaac actctttttg tagaatctgc aagtggatat ttggatagct       420
     ttgaaggttt cgttggaaac gggaatatct tcatataaaa tcaagacaga agcattctca       480
     gaaaattctc tgtgatgttt gcattcaact cataggggtg aacacttccc ttcatagagc       540
     aggtttgaaa cactcttttt gtaatattta gaagtggaca tttgcagcgc tttgaggcct       600
     atgttgaaaa aggaaatatc ttctcctaaa aaccagacag aagcattctc agaaacttcc       660
     ttgtgatgtg tgtactcaag taacagagtt gaaccttact tttgacagag cagttttgaa       720
     acagtctttt tgtagaatct ggaagtagat atttggatac ctttgaggat ttctttggaa       780
     acgggatatc ttcatataaa atctagacgg aagcattctc agacacttct ttgtgctgta       840
     tgtcctcaac taacagagtt gaacctttgt gtggatacag cattttggaa acattccttt       900
     agtagaatct gcaagttgat atttagatag ctaggaagat ttccttggaa acgggaatat       960
     cttcacataa aatctagacg gaagcattct cagaaactgc tttgtgatgt cttcattcaa      1020
     gtcacagagt agaatgttcc cttttataga gcaggtttga aacactcagt gcactacctg      1080
     gaagtggaca tttggagcgc tttgaggcct atgttgaaaa aggaagtatc ttcccataga      1140
     aactagacag aagcattctc agaaacttgt ttgtgatgtg tgtattcaac taacagagat      1200
     gaacctttct ttttacagag cagttttgaa acactctttt tgtagaatct gaaagtggat      1260
     atttggatag ctttgaggat ttcgttggaa acgggattac atataaaagc tagggagaag      1320
     cattctcagg aacttctttc tgatgtttgc attcaagtca cagaactgaa cattcccttt      1380
     catagagcag gtttgaaaca ctctttctgt agtatctgca agtggacgtt tcaagcgctt      1440
     tcaggcctgt ggtgaaaaag gaaatatctt caaataaaaa ctagacagaa gcattctcag      1500
     aaacttattt gcgatgtgtg ttctcaacta acagaggacc tttgttttga tacaacattt      1560
     tgcaaacact cttttgggag aatctgcagg tgaatacttg gatagctttg aaggtttctt      1620
     tggaaacggg aatatcttca tataaaatca agacagaagc attctcagaa acttctctgt      1680
     gatgtttgca ttcaactcat agaggtgaac acttcccttc atagagcagg tttgaaacac      1740
     tctttttgaa atatttggaa gtggacattt gcagcgcttt gaggcctatg ttgaaaaagg      1800
     aaatatcttc tcctaaaaac cagacagaag cattctcaga aacttccttg tgatgtgttt      1860
     actcaagtaa cagtgttgaa ccttactttt gacagagccg ttttgaaaca ctctttttgt      1920
     agaatctgga agtagatatt tggatacctt tgaggatttc tttggaaacg ggatatcttt      1980
     atataaaatc tacacagaag cattctcaga cacttctttg tgctgtatgt cctcaattaa      2040
     cagagttgaa cctttgtgtg gatacagcat tttggaaaca ttcctttagt agaatctgca      2100
     agttgatatt tagatagcta ggaagatttc cttggaaacg ggaatatctt catataaaat      2160
     ctagacggaa gcattctcag aaagtgcttt gtgatgtttg cattcaagtc acagacttga      2220
     atattccctt ttatagagca ggtttgaaac actctttctg cactacctgg aagtggacat      2280
     ttggagcgct ttgaggccta tgttgaaaaa ggaaatatct tcccataaaa actagacaga      2340
     agcattctca gaaacttctt tgtgatgtgt gtatcaacta acacaga                    2387
//


spacer
spacer