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EBI Dbfetch

ID   ABBA01001522; SV 1; linear; genomic DNA; WGS; HUM; 8577 BP.
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AC   ABBA01001522;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279016481, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-8577
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-8577
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 222d13ed9409622f5e6152a8a5c6f404.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270589.
DR   ENA-CON; DS486691.
DR   ENA-CON; GJ212110.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..8577
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 8577 BP; 2838 A; 1745 C; 1386 G; 2608 T; 0 other;
     caaagaaggt tctcagaatt cttctgtcta gtttttatgt gaacatattt ccttttccac        60
     cttaggcctc aaagtgctcc caatgtcaat ttgcagattc cacaaaaaga aaatttcaaa       120
     actactccat caaaagaaag gtttcactct ttcagatgaa tgcacacatc acaaagtagt       180
     ttctctgatt tcttctgtca agattttatg tgaagatatt tccttttcta ccgtaggcca       240
     caaagtgctt ccaatgtcca ctgggagatt ttacagaagg gtgtctctaa actgctcaat       300
     caaaagaaag gttcaactct gtgagatgaa cgcatgcttc acaaataagt tactcagaag       360
     tcttctgtct agtttttatg tgaagatatt tcgttttcca ccataggcct caaagggctc       420
     ttaatctcca cttgcagatt ctacaaaaga gtgtttcaaa actgctgaaa caaaagaaag       480
     ttttaactct gtgacatgaa tgcacacatc acaaagaagt ttctcagatt gcttttgtct       540
     agattttaaa tgaagatata tccttttcta ccataggccc caaggcgctc caaatgtcca       600
     cttgcagatt caacaaaaat agtatttcaa aactggtaca tcaaaaggaa gtttcgactc       660
     ttggagatga atggacacat cacaaagaag tttctcagat tacttctgtc tagattttaa       720
     gttaaaatat atccttttct accataggac ccaaggcact ccaaatgtcc acttgcagat       780
     tctgcaaaaa gagtgtttca aagctggtac atcaaaagga aggttcaact cttggagatg       840
     aatgcacaca tcacaaaaaa gtttctctga atgcttcaat cttgttttta tgtgaagata       900
     tttccttttc ctccataggc ctcaaagcgc tccaaatgtc cacttgcaga tcctacaaaa       960
     agagagtttc caaattgcac aatcaaaaga aagtttcaac tctgtgatat gaatgcacaa      1020
     atcacaaaga agtttctcaa aattattctg tctcgtttta gtgtgaaagt atttattttc      1080
     cctctacagc cctcaaggtg ctcaaaatgt ccacttgcag attctacaaa aagagtattt      1140
     caaaactggt ccattaaaag aaaggttcaa ctctgtgaga tgaatgcaca catcacaaag      1200
     aaggttctca gaattcttct gtctagtttt tacgtgaaca tatttccttt tccaccttaa      1260
     gcctcaaagc actcccaatg tcaatttgca gatttcacaa aaagaaaatt ttaaaactac      1320
     tccatcaaaa gaaagatttc actgtgtgag gtgaatgtac acatcacaga gaaatttctc      1380
     agattgcttc tgtcttgatt ttctgtgaag acatttcttt ttctaccata gactgcaaag      1440
     cactccacat gtccactggc agattctaca aaaagagtgt ttccaaactg ctcaatcaaa      1500
     agaaaggttc aactctgtgg tatgaataca caaatctcaa agaagtttca cagaattctt      1560
     ctgtctcatt tatatttgaa agcatttctt tcccactaca ggcctcaagg tgctcgtaat      1620
     gtccaattgt agatactaca aaaagagtat ttgaaaactg gcccattaat agaaaggttc      1680
     aactatggga ggtgaataca cacatcgtga agaagttatt cagaatgctt ctatctagtg      1740
     tttattgaag atatttccat ttccaccatc ggcctcaaag ccctccaaat gtccacttgc      1800
     agaatgcaca taaagagatt ttcaaaactg ctaaatcaaa ggaaaggttt aactctggga      1860
     tatgaatgca cacgtcacaa agaagttttt cggatagttt ctgtctagat tttaagtgaa      1920
     gatatttcct tttgtaccat aggttgcaaa acgctccaaa tgtccactgg cagatcctac      1980
     aaaaagaatg tttccaaact gctcaatcaa aagaaaggtt caactctgtg atatgaatac      2040
     acaaatcaca aagaagtttc tcagaattct tctgtctcgt ttttatgtga aagtatttcc      2100
     tttccctcta taggcctcaa ggtgttcgta atgtccactt gcagatacta caaaaagagt      2160
     atttcaaaac tggtaaatta atagaaaggt tcaactatgg gagatgaata cacacatcac      2220
     gaagaagtta ttcagaatgc ttccatctag tgtttgttga agctatttcc ttttccacca      2280
     ttggcctcca agccctccaa atgtccactt gcagaataca cataaagaga gtttcaaaac      2340
     cgctaaatca aaggaaaggt ttaactctgg aatatgaata cacacgtcac aaagaagttt      2400
     ttcagatagg atctgtctag attttatgtg tggatatttc cttttctacc ataggctgca      2460
     aaacgctcca aatgtccact tgcacattct acaaaaagag tgtttccata ctgctcaatc      2520
     aaacaaagtt tcaactctgt gagatgaacg cacacataaa aaagaagttt ctcagaattc      2580
     ttctgtgtag tttttatgtg aggttatttc cttttccacc ttaggcctca aagtgctccc      2640
     aatgtccaat tgcagattca acaaaaagag agtttcaaaa ctgctcactc aaaagaaagg      2700
     tttcactcag tgagataaat gcacacatca cagagaagtt tctaagattg cttctgtcaa      2760
     gattttatgt gaagatattt ctttttctac cgtaggtcgc aaagtgctcc caatgtccac      2820
     tgggacattt tacaaaaggg tgtctccaaa ctgctcaatt aaaagaaagg ttcaactctg      2880
     tgagatgaac gcatgcttca caaagaagtt actcagaata cttctgttta gtttttatgt      2940
     gaagatattt cgttttccac cacaggcctc aaagggctat taatctccac ttgcaggttc      3000
     tacaaaagag agtttcaaaa gtgctcaatc aaaagaaagg tttgactctg tgacacgaat      3060
     gcacacatca cagagaagtt tctcagatta cttctgtcta gattttaagt gaagatatat      3120
     ccttttctac cataggcccc aaggcactcc aaatgtccac ttgcagattc tacaaaaaga      3180
     gaatttcaaa actggtacat caaaaggaag gttcaactct tggagatgaa tgcacacatc      3240
     acaaagaagt tgctctgaat gcttcaatct tgtttttatg tgaagatatt tcgttttcca      3300
     ccataggatt caaagcgctc caattgtcca cttgcagatc ctacaaaaag agagttttaa      3360
     aactgcttaa tcaaaagaaa tatttaactc tctgagataa aggcaaatat cacaaagaag      3420
     tttctcagat tgcttctgtc tagattttat gtgaagatat ttccctttct accataggcc      3480
     tcaaatcgct ccaaatatcc atatgcagat cctacaaaaa gtttgtttcc aaactgttca      3540
     ataaaaagaa atattcaact ttgtgaaatg aatgcacaca tcataaagaa tgttctcaga      3600
     attcttctgt ctagttttta tgtgaacata tttccttttc caccttaggc ctcaaagcac      3660
     tcctaatgtc aatttgcaga ttccacaaaa agaaaatttc aaaactactc catcaaaaga      3720
     aaggtttcac tctttgagat gaatgcacac atcacaaaga agtttctcag attgcttctg      3780
     tctagatttt ctgtgaagag atttcatttc ctaccatagg ccacaaagtg caccaaatat      3840
     ccactggcag attctacaaa atagagtttc aaactgcaca atcaaaagta agtttctact      3900
     ctgtgatatg aatgcacaaa tcacaagtaa gtttctcaaa attcttctgt atccttttaa      3960
     tgtgaaagta tttcttttcc ctctacaggc ctcaaggtgc ccaaaatgtc caattgcaga      4020
     ttctacaaaa agagtatttc aaaactggtc cattaaaaga aaggttcaac tctgggagat      4080
     gaaaacacac ataaagaaga agttattcag aatgcttctg tctagatttt attgaagata      4140
     tttccttttc caccatcagc ctcaaagccc tcaaaatgtc cacttgcaga ttacacaaaa      4200
     agagagtttc aaaattggtg aaccaaaaga aaagtttaac tctggaatat gaatgcacac      4260
     gtcacaaaag gagtttttca gatagtttct gtcttgattt tatgtgtaga tatttccttt      4320
     actaccatag gctgcaaaac gctccaaatg tccacttgca gattccacag aacgagtgct      4380
     tgcatactgc tcaatcaaac aaaggttcaa ctctgtcaga tgaatgcaca cataacaaag      4440
     aagtttctca gaattcttct gtctagattt tatgtgaaga tgtttccttt tccaccttag      4500
     gcctcaaagt gtcccagtgt ccaattgcag attcaataaa aagagagttt caaaactgct      4560
     caatcaaaag aaaggtttca ctcagtgaga tgaatgcaca catcacagag acgtttctaa      4620
     gattgcttct gtcaagattt tatgtgaaga tatttccttt tctaccgtag gctgcaatgc      4680
     gctccaaaag tccactggga gattttacaa aagggtgtct ctaaactgct caatcaaaag      4740
     aaagttcaac tctgtgagat gaacgcatgc ttcacaaaga agttactcag tattcttctg      4800
     tctagttttt atgtgaagat atttcgtttt ccaccatagg cctcaaaggg ctcttaatct      4860
     ccacttgaag attttacaaa atagaatttc aaaactgctc aatcaaagga aagttttaac      4920
     tctgtggcat gaatgcacac atcacaaaga agtttctcag attgcttttt tctagatttt      4980
     aaatgaagat atatcctttt ctaccatagg ccccaaggag ctccaaatgt ccacttgcag      5040
     attctacaaa aagagtgttt ccatactgct caatcaaaca aaggttgaac tctgtcagat      5100
     gaatgcacac atcagaaaga agtttctcag aattcctctg tctagttttt gtgtgatgat      5160
     atttcctttt ccaccacagg cctcaaagtg ctcccaatgt ccaattgcag attcaacaaa      5220
     aagagagttt caaaactgct caatcaaaag aaaggattca ctcagtgaga tgaatgcaca      5280
     catcacagag aggtttctaa gattgcttct gtcaagattt tatttgaaga tatttccttt      5340
     tctactgtag gctgcaatgc gctccaaatg tccactggga gattttacaa aagggtgtct      5400
     ccaaactgct caatcaaaag aaaggttcaa ctctgtgaga tgaacgcatg cttcacaaag      5460
     aagttagtca gaattcttct gtctagtttt catgggaaga tatttcgttt tccaccatag      5520
     gcctcaaagg gttcttaatc tccccttgca ggttctacaa aagagagatt caaaactggt      5580
     caatcaaaag aaagggttaa ctctgtcaga tgaatgccta catcacaaag aagttcctca      5640
     gattacttct gtctagattt taagtgaaga tatatccttt tctaccatag gcccctaggc      5700
     gctccaaatg tacacttgca gattctacaa aaagagaatt tcaaaactgg tacatcaaag      5760
     gaagcttcaa ctcttggaga tgaatgcact catcagaaag aagtttctct gaatgcttca      5820
     atcttatttt tatgtgaaga tatttccttt tccaccatag gcctcaaacc gctccaaatg      5880
     tccacatgca gatcctacaa aaagagagtt ttaaaactgc tcaatcaaaa gaaaggttta      5940
     actctgtgaa ataaatgcac atatcacaaa gaagtttctc agattgcttc tgtctagatt      6000
     ttatgtgaag atagttcctt ttctaccata ggcctcaaat cgctccaaat atccacatgc      6060
     agattttgca aaaagattgt ttccaaactg ctcaatcaaa agaaatgttc aaatctgtga      6120
     gatgaatgcg cacatcacaa agaaggttct tagaattctt ctgactagtt tttatgtgaa      6180
     catatttcct tttccacctt agtcctcaaa gcgctcccaa tgtcaatttg tagattccac      6240
     aaaaagaaaa tttcaaaact actccatcaa aagaaagttt tcactctttg agatgaatgc      6300
     acacatcaca aagaagtttc tcagattgct tctgtctaga ttttctgtga agagatttcc      6360
     ttttctacca taggctgcaa agcacaccaa atgtccactg gcagattcta caaaaagaga      6420
     gtttccaaac tgcacaatca aaagaaagtt tcaactctgt gatatgaacg cacaaatcac      6480
     aaagaagttt ctcaaaattc ttctttctcg ttttaatgtg aaagtatttc ttttccctca      6540
     acgggcctca aggtgctcaa aatgtccact tgcagattct acaaaaagag gatttcaaat      6600
     ctggtccatt aaaagaaaga ttccaatctg ggagatgaat ttacacatca cgaagaagtt      6660
     attcagaatg cttctgtcta gtttttattg aagatatttc gttttccacc ataggcctca      6720
     aggagctcca aacgtccatt tgcagattcc acaaaaagat tacttcaaaa ctggtccatc      6780
     aaaagaaatg ttgaactctg ggagatgaat gcacacatca caaagaagtt cctcagaatg      6840
     cttctaacta gtttttatct gaagatattt cttttcctcc ataggcctca aaatgctcca      6900
     aatatattcc tgcagattct gcagaaagag tgtttccaaa ctgctcaata aaagaaagat      6960
     tcaactctgt gagatgaaca cacacatcaa aaggaagttt ctcaaaaatc ctccgtttag      7020
     attttatgtg aagatatttc catttccgtc atgggtctca atgtgcttta aacgtccact      7080
     agcagattct aaaaaaaaaa aaaaaactgc tcaatcaaaa agaaaggttt aactctatga      7140
     catgaatgca cacatcacaa tgaagtttct cagattgctt ctgtctagat tttatgtgaa      7200
     gatatatact ttcttatcat aggtctcaaa gtgctccaaa tatccacttg cagattctac      7260
     aaaagaaagt atcaaaactg ctctttcaaa ggaaattata actctgtgag atgaacgcag      7320
     acatcacagg gaagtttctc agattgcttc tgtctagatt ttatgtgaag atatttcctt      7380
     ttctaccata ggccacaaag ccctccaaat gtcaacttgc agattctaca aaaacagttt      7440
     caaaactgct caatcaaaag aaaggtttaa ctctgtgaga tgaatgcaca catcagaaag      7500
     aattttctct gattgcttct gtctagattt tatgtgaaga tatttccttt tctaccatag      7560
     gctgcaaagc gctcggaatg tccacttgca gattgtacaa aaattatgtt tccaaactgc      7620
     tcaatgaaaa gaaagttaca actctgtgag atgaacggat acatcacaaa gaagtttctc      7680
     agatttcttc tgtctagttt ttatgtgaag atatttcctt ttccactata ggcctgaaaa      7740
     cgctgcactt gtctacgtcc agattctaca aaaagagagt ttcaaaactg ctcaattaaa      7800
     aaatggtttt aactctgtga gatgaatgca cacatcacaa agaagttcct catgttgctt      7860
     ctgtctagat tttttgtgaa gatatttcct tttctaccat aggctgcaaa gtgcaccaaa      7920
     tgtccccttt cagattcaac aaaaagagtg tttccaaact gctcaatcaa aagaaatgtt      7980
     caactctgtg agatgagtgc acgcatcaca aagaagcttc tcagaattct tctgtctagt      8040
     ttttatgtga aggtgtttca ttttccacaa taggcctcaa ggtgctcaaa atctccactt      8100
     gcagattcaa caaaaagagt attccaaaac tgatccatca aaagaaagct taaattctgg      8160
     gagatgaatg cacacatcat gaagaagttt ctcagatttc ttctgtctgg attttatgtg      8220
     aagatatttc cttttctacc atagaccaca aagcactcca aatctccact tgcaggttct      8280
     aaaaatgtag tgtttccaaa ctgctcattg aaaagaacgg ttcaactctg taagatgaac      8340
     gcacacataa caaagaagtt tctcagaatt cttctgtctg gtgtttatat gaagatattt      8400
     tcttttccac cataaagcct caaggcactt gaaatgtcca cttgcagatt ctacgaaaag      8460
     agtatttaaa aactggtcct tcaaaagaaa ggttcaactc ttgagatgaa tgcacacatc      8520
     acgaagaagt ttctcagaat atttctatct ggtttttatg tgaagatatt tcctttt         8577
//


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