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EBI Dbfetch

ID   ABBA01001520; SV 1; linear; genomic DNA; WGS; HUM; 6354 BP.
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AC   ABBA01001520;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279004302, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-6354
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-6354
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; b2a091b7b9c8f738e8ef70fb0140ca16.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270589.
DR   ENA-CON; DS486691.
DR   ENA-CON; GJ212110.
DR   BioSample; SAMN02981236.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..6354
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 6354 BP; 1929 A; 1035 C; 1279 G; 2111 T; 0 other;
     gttgatccta tcttttgata cagcagtttt gaaactctct ttttgtagaa tcttcaagta        60
     gatatctgaa gccatttttg gcctaaggtg gaaaaaaaaa tcttcacata aaaactacat       120
     agaagcattc tgagaaactt ttttgtgatg tttgcattca actcacagtg ttgaagcagt       180
     ctcttgatag agcagttttg aaacactctt tttgtagaat ctgcaagtgg atatttggag       240
     cgctttgagt cctattgtgg aaaaggcaat atcttcacat aaaaactaca cagaagcatt       300
     ctgagaaact tctttgtgat gtgtgccttc aactcacaga gttgaagcta tcttttgatg       360
     aagcagtttt gaaactccca ttttgtagga tctgaaagtg gatatttcga gccctttatg       420
     cccttttgtg gaaaaggaaa tatcttcaca taaaagctgc ccagaagcat tctgagaaac       480
     ttctttttga tgtatgcttt catctcagag tgttgaacat ttcttttgat tgagcagttt       540
     gggatccctc tttttgtaga atctgcaagt ggaagtttgg agccctttga ggcctatggt       600
     ggaaaaggaa atatcttcaa ataaaaacta cacaaaaaca ttctgagaaa ctgctttgtg       660
     ttgtgtgcat tcatctcaca aggttgaacc tatcttatga ttgagcagtt tcaaaacact       720
     cttttcgtag aatctgaagt ggatatttgg agcgccttgt tgcctacagt ggagaatcaa       780
     atgtcttcac ataaaaacaa gtacagaagc attctcagaa ccttctttgt gatgtatgca       840
     ttcatcccat ggagtttaac ttttcttttg attgagcact tttgaaacac tctttttgaa       900
     gactctgcaa gtagatattt ggaggccttt gatgcctatt ttggaaaagg aaatatcttc       960
     acataaaaac tacacagagg cattctgaga aacttctttg tgatttgtgc agtcaactaa      1020
     tggagttgaa acttcctttt tatagagcag tgttgaagcg atctttttga agaattagca      1080
     agtggatatt tggagagctt tgaggcctat ggtggaaaag gaaatatctt caaataaaaa      1140
     ctatgcagaa acattctgag aaacttcttt gtgatgtgtg cattcaactc acaggggaga      1200
     gcctatcttt tgattgagcc gttttgaatc tctttttttg tataaatctg cagtgggtat      1260
     taagagccct ttgtggtcca tggtggaaaa gaaaatatct tcaaataaaa actacacaga      1320
     agcattctga ggaacttctt tgtgagatgt gcactcaact cacagagttg aacctatctt      1380
     ttgattgagc agtttttaat ctctcttttt gtagaagcag catgtggata tttgaagacc      1440
     tttgtggcct atggtggaaa acgaaatatc ttcaaataaa aactacacag aagtagtctg      1500
     agaaacttct ttgtgatgtg tgcattcatc tcacagagtt gaacctttat tttgactgag      1560
     cagttttgag acaatctttc catataacct ggaagtgaat atttggaggg ctttgagttc      1620
     tattttggaa atggagatat cttcatatga aaactacata gaagcattct gagaaacatc      1680
     tgtgtgaggt gtgcactgaa gtcacattgt tgaacctatc ttttgattca gcagttttga      1740
     atctatcttt ttgcagaatc tgcgagtgga tatttggagc gctttgaggc gtactgtgga      1800
     aaatcaaata tcttcacata aaaactacac agaagcattc tgagaaactt ctttgtgatg      1860
     tgtgcattca tctcacagag ttgaatgtct ctgttgattg agcagttttg aaacactctt      1920
     tttgtagaat ctgaaagtgg atatttggag ctcattgggg cctactgtgg aaaaacaaat      1980
     atcttcacat aaaaactaca aagaagcatt ctgagaaact tctttgtgat ctgtgcatta      2040
     atctcactga gttgaatctt tcttttgata cagcagtttt gaaacactat ttttttagaa      2100
     tctgtaggtg gatatttgga gccttttgag gcctatagtg gagaaggaaa tatcttcaca      2160
     taaaaactac gcagaagcat tctgagaaac tactttgtga tgtgtgcatt catctcacag      2220
     agtagaacct ttcttttgat tgagcagttt tgaaacactc tttttgtaga atctgaaagt      2280
     ggatatttag agcaatttga ggcttattgt ggaaagagaa atatcttcaa ataaaaacta      2340
     cccagaagca ttctgagaaa cttatttgtg atgtgtgcat tcaactcaca gtgttgaacc      2400
     tatctgttga ttgagcagtt tagaatctct ctttttatag aatctgcaag tgaatatttg      2460
     gagccctatt tcaccctata gtggaaaagg aaatatcttc aaatagaaac tacacagaag      2520
     cattcaggga acctaatttc tgatgagtgc attcatcaca gagttgaacc tttgttttga      2580
     tttagcagtt ttgaggcaat ctttctgtag aatctggaag taaatatttg gagggctttg      2640
     aattctgttt tggagaagga gatatcttca tataaaaact acacagaagc tttctgagaa      2700
     acacctttgt gaggtgtgca ttgaagtcac agagttgaac ctatcttttg attcagcaga      2760
     ttttaatctc tctttctgca gaatctgtga gtggatattt ggagcgcttt gaggcctact      2820
     gtggaaaatc aaaaatcttc acataaaaac tacacagaag cattttgaga aacttctttg      2880
     tgaggtgtgc attcaactca cagagttgaa cttatctttt cattgagaac ttttgtatct      2940
     cttttttggt agaatctgca agtggatatt tggagctctt tgcaccctat ggtggaaaag      3000
     gaaatatctt cacataaaaa ctacacagaa gcattcagag aaacttcttt gtgatgaatg      3060
     ctctttgcac cctatggtgg aaaaggaaat atcttcacat aaaaactaca cagaagcatt      3120
     cagagaaact tctttgtgat gaatgcattc ctcacagagt tgaacctttc tttttattga      3180
     gtagtactga aaccctcttt ttgcagaatc accaattgga tatttggaga gctttgaggc      3240
     ctgttttggg aaatgaaata tcttcaaatt aaaactacac agaagcattc tgagaaactt      3300
     ctttgtgatg tgtgcattca actctcaggg ttgctcctat cttatgattg agcagttttg      3360
     aaacactcgt tttgtagaat ctgcaagtgg atatttagag cgatttgagg cctattgtgg      3420
     aaaagaaaat atcttgacat aaaaactaca cagaagcatt ctgagaaact tctttgggaa      3480
     gtgtgcattc aactaacagt gtggaaccta tcttttgatt gagcagccta gaatctcttt      3540
     ttgtagaatc tgcaagtgga tatttggagc cccatttcgc cctatggtga aaaacgaaac      3600
     atcttcacat aaaaaataca cagaagcatt ctgagaaact tctttgtgat gtttgcattc      3660
     aactcacaga gtcgaaccta tcttttgata gagcagtttt gaatctctct ttttgcagaa      3720
     tctgcaagtg gatatttgga aagctttgag gcctattgtg gaaaaggaaa tatattcaca      3780
     taaaaactac agagaagcat tctgagaaac ttctttgtga ggtatggatt caacccacag      3840
     agttggactt atcttttcat tgagcagttt tgaatgtctc tttttgtaga atctacaagt      3900
     ggatatttgg agccctttgc aactatgttg gaaaaggaaa taacttcaaa taacaactac      3960
     acagaagcct tcagataaac ttctttgtga tgagtgcatt catcccacag agttgaacct      4020
     tcctttttat tgagcagttt tgaaacacta tttttgcaga atcagcaagt ggatatttgg      4080
     agcactttga ggcctactgt ggaaaagcaa atatcttcac ctaaagacta cacggaagca      4140
     ttatgagaaa cttccttgtg atgtgtgcat tcatctcaca gagttgaacc tttcttttga      4200
     ttgagcagtt ttgaatctct cttttggtag aatctctaat tggatatttg gagtgatttg      4260
     aggcctattg cggagaagga aatatcttca cataaaatct gtacagaaga attctgagaa      4320
     acttctctgt gatgtgtgct ttcaactcac atagttgaac ctatctattg attgaaactc      4380
     tttgtagatt cggcaagtgg atatttggag ccctttgcaa cctatggtgg aaaaggaaat      4440
     atcttcaaat aaataatgcg cagaagcatt caaagaaact tctttgtggt gagtgcattc      4500
     atcacagaga gttgaatctt tcctttgatt gagcagtttt gaaacactct ttttgcagga      4560
     tctgcaggca gatattttag aactttgagg ccaaatgtgg aaaaggaaac atcttcacat      4620
     aaaaactaca cagaagcatt ctgagaagct tctttgtgag gtgtgcattc aactctcagt      4680
     gttgaacgta tcatcttttg attcggcagt tttgaatatc tgttttgtag gatctgctac      4740
     tggatatttg gagccctttg cagccaatgg aggaaaagga catatcatca aatagaaact      4800
     acatagaagc attctgagaa acgtctttgt gttgtgtgca ttcatctcac agggttgaac      4860
     acttcctttc atggagcagt tttgaaacag tatttttcca gaatctgcaa gtggatattt      4920
     ggagagcttt gagacatgtt gtggaaaagg aaatatcttc aaataaaaac tacacagaag      4980
     tattcagaga aacttcttta tgatgagtgc attcatcaca gacttgaaac tttcttttga      5040
     ttgagcaatt ttgaaactct ccttttgtag aagatggaag tggatatttc aaggtctttg      5100
     aggtttattt tggaaacgga aatatcctca cataaaaact acatagaagc attctgacaa      5160
     acttctctgt tatgtgttca ttcaactcac agtgttgaac gaattttttg attgagcagt      5220
     tttcaatccc tccgtttgta gaatgtggaa gtggatattt ggagctcttt gcaccctgtg      5280
     ttggaaaagg aaatatcttc aaataaaaac tacacataag cattctgaaa aacttctttg      5340
     tgttaagtgc attcatcaca cagagttgaa agtttctttt gattgagcag ttttgaaaca      5400
     ctcttttcgt agaatctgga agtggatatt tggagggctt tgaggcctat tttggaaaag      5460
     gaaatatctt aacataaaaa ctgcacagaa ttattcagag aaactccttt gttatgtgtg      5520
     cattcaacac acagagttga gcctatcttt tgattgagca gttttgagtc tctttttgca      5580
     gaatctgcaa gtggatattt gtatcgcttt gaggcccact gtggaaaagc aaatattttc      5640
     aaataaagag tacacagaag cattctgaga aactttgttg tgaggtgtgc attcaactca      5700
     cagagttaaa cccatctttt gattgagcag ttttgaatct ctctttttgc agaatctgaa      5760
     gtggatattt ggagtgcttt gtggcctatt gtggaaaagg aaatatcttc acataaacac      5820
     tacacagagg cattctgaga aacttctttg tgatgtgtgc attcaactga cagagttgaa      5880
     cctatctttt gattgggcag ttttgaatct ctctttttgt agaatctcta attggatatt      5940
     tggagcaatt tcaggcctat tgtggaaaag gaaatatctt cacataaaaa ctacacagag      6000
     gcattctgag aaacttcttt gtgatgtgtg cattcaactg acagatttga acctatcttt      6060
     tgattgagca gttttgaatc tctctttttg tagcatctgc aggtggaatt ttggagccct      6120
     ttgcagccta cgttggaaaa ggaaatatct tcaaataaaa actacacaga atcattctgg      6180
     gaaacatctt tgtgatgagt gtattcatca caaagggttg aatctttcta ttgactgagt      6240
     aatttggaaa cacttttttt gtagaacctg gaagtggaaa tttgacgagc tttgtggtct      6300
     attttggaaa agaaatatct tcagattaaa actacacaga agctttctgg gaaa            6354
//


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