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EBI Dbfetch

ID   ABBA01000597; SV 1; linear; genomic DNA; WGS; HUM; 2489 BP.
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AC   ABBA01000597;
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PR   Project:PRJNA19621;
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DT   05-JUN-2007 (Rel. 92, Created)
DT   23-AUG-2014 (Rel. 121, Last updated, Version 4)
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DE   Homo sapiens CTG_1103279012192, whole genome shotgun sequence.
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KW   WGS.
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-2489
RX   PUBMED; 17803354.
RA   Levy S., Sutton G., Ng P.C., Feuk L., Halpern A.L., Walenz B.P.,
RA   Axelrod N., Huang J., Kirkness E.F., Denisov G., Lin Y., Macdonald J.R.,
RA   Pang A.W., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D.A., Beeson K.Y., McIntosh T.C., Remington K.A.,
RA   Abril J.F., Gill J., Borman J., Rogers Y.H., Frazier M.E., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   "The Diploid Genome Sequence of an Individual Human";
RL   PLoS Biol. 5(10):E254-E254(2007).
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RN   [2]
RP   1-2489
RA   Levy S., Sutton G., Ng P., Feuk L., Halpern A.L., Walenz B., Axelrod N.,
RA   Huang J., Kirkness E.F., Denisov G., Lin Y., MacDonald J.R., Wing A.,
RA   Pang C., Shago M., Stockwell T.B., Tsiamouri A., Bafna V., Bansal V.,
RA   Kravitz S.A., Busam D., Beeson K.Y., McIntosh T.C., Remington K., Gill J.,
RA   Borman J., Johnson J., Resnick A., Rogers Y.-H., Frazier M., Scherer S.W.,
RA   Strausberg R.L., Venter J.C.;
RT   ;
RL   Submitted (18-MAY-2007) to the INSDC.
RL   J Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850,
RL   USA
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DR   MD5; 753e02ef3b1c590e0e3376ad2ebb5836.
DR   ENA; ABBA010000000; SET.
DR   ENA; ABBA000000000; SET.
DR   ENA-CON; KI270414.
DR   ENA-CON; GJ211937.
DR   BioSample; SAMN02981236.
DR   Ensembl-Scaffolds; ABBA01000597.1:1-2489; homo_sapiens.
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CC   DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 |
CC   Sex: Male | Ethnicity: Caucasian | Descent: European - England
CC   This WGS project represents a composite haploid version of the
CC   genome where the highest scoring allele contained is represented in
CC   the consensus sequence.  The number of contigs may differ from
CC   those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because
CC   some short sequences were found to be foreign and thus were
CC   suppressed. Scaffolds DS486015-DS490530 represent the 4528
CC   scaffolds that are discussed in the paper.  There are fewer than
CC   listed in the paper because 12 of the original were determined to
CC   be foreign, so were omitted here.  Scaffolds DS490531-DS490620 are
CC   the remaining multi-component scaffolds, not in the set of 4528.
CC   The chromosomes are records CM000462-CM000485, assembled from the
CC   scaffolds.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2489
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /sex="male"
FT                   /dev_stage="adult"
FT                   /db_xref="taxon:9606"
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SQ   Sequence 2489 BP; 691 A; 444 C; 496 G; 858 T; 0 other;
     ttaacctttc ttttaatcga gcagtttgga aacactgtct ttgtatgtct gtaagtggtt        60
     aattggccct ctttgagccc ttctttggaa acgagatttc ctcatataat gctagacaga       120
     agaattctca gtaacttctt tgtgttgttt gtattcaact cacggatttg aaccttcctt       180
     tagagagagc agatttgaaa cactcttttt ttggaatttg caagtgcaga cttcaagcgc       240
     ttctgggcct atggcagaaa aggaaatatc ttcgtataaa aactacacag aatcattctc       300
     aagaaccact ttgtgatgtg tgcgttcaac tcacagattt taacctttct tttaatcgag       360
     cagtttggaa acactctgtt tgtaaagtct gcacgtgcat atttggactt ctttgaggcc       420
     ttccttggaa acgggatttc ttcatataat gctagacaga agaattctca gtcacctctt       480
     tgtgttgtgt gtattgatct cacagatttg agccttcctt tagacagagc agttttgaaa       540
     atctctttct gtggaattag caagtggaga tttcaagtga tttgaggcca atctttgaaa       600
     tggaaatatc ttcgtgtaaa attagacaga atcattgtca gaaactactt tgtgatgtgt       660
     gctttcagct cacagagttt cacctttctt ttcatagagc agtttggaaa gactctgttt       720
     gtaatgtctg ctagtgaata cttggacccc tttgaggcct tcgttagaag cggaattttt       780
     tatatactgc tagacagaag aattctcagt aaatctttct gctgtgtgta ttcaacacac       840
     agagttgaac catcctttat cctgagcagt tttgaaacac tctttgtgtg gaatttgcaa       900
     gtggagaatt caagcgattt gaggccaatc ttagacatgg aaatatcttc gtagtaaaac       960
     tacacagagt cattcgcaga aactagtttc tgatgtgtgc cttcaactca cagagtttaa      1020
     tctttccttt aatagagcag tttggaaaca ctccatttgt aaagtctgca agtgcttatt      1080
     tggacctctc tgaggccttc gttggaaacg ggatttcttc atataatgtt agacagaaga      1140
     attctcagta acttctttgt gttgtgtgta ttcaactcac agggttgaac ctttctttac      1200
     agagagcaga tttgaaacat tctttccgtg gaatttgcta gtgcagattt caaacgcttc      1260
     gaggacaatg gtagaaaagg atatatcttc gtattagaat gagagaaaag cattctcaga      1320
     aaacactttg taatgtgtgc gttcaactca cagagtttaa cctttctttt aatcgagcag      1380
     tttgcaaaca ctctctttgt aatgtctgca agttgttaat tggccctctt tgagcccttc      1440
     tttggaaacg agatttcctc acataaggct tgacagaaga attctcagca acttctttgt      1500
     gttgtttgta ttcaactcac ggatttgaag cttcctttag agagagcaga tttgaaacac      1560
     tctttttttg gaatttgcaa gagcagattt caagcgcttc taggcctatg gcagaaaagg      1620
     aaatatcttc gtataaaaac tacacagaat cattctcaag aactactttg tgatgtgtgc      1680
     attcaactca cagattttaa cctttctttt aatcgaacag tttggaaaca ctctgtttgt      1740
     aaagtctgca agtgtatatt tggacttctt tgaggccttc gttgggaacg ggagtttttc      1800
     atatgctgct agacagaaga attctcagtc acttctttgt gttgtgtgta ttcaagtcac      1860
     agaattgaaa cttcatttac acagagcagt tttgaaaaac tctttctgtg gaatttgcaa      1920
     gtggagatta catgcgattt aaggccaatc tttgaaatgg aaatatctcc gtgtaaaaac      1980
     tagacagaat cattctcaga aactactttg tgatgtgtgc gttcaactca cagggtttaa      2040
     cctttctttt catagagcag tttggaaaca ctctggttgt aaagtctgca agtgcatatt      2100
     tggacttctt tgagaccttt gttggaaatg ggatttcttc atataatgcc agacagaaga      2160
     attctcagtc acctctttgt gttgtgtgta ttgatctcac agatttgaac cttcctttag      2220
     acagagtagt tttgagaaac tctttctgtg gaatttgcaa gtggagatta catgcgattt      2280
     aaggccaatc tttgaaatgg aaatatctct gtgtaaaaac tagacagaaa cattctcaga      2340
     aactactttg tgatgtgtgt gttcaactca cagggtttaa ccttttcttt tcatagagca      2400
     gtttggaaac actctggttg taaagtctgc aagtgcatat ttggacttct ttgaggcctt      2460
     cattggaaac gggatttctt catataatg                                        2489
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