Dbfetch
ID JN709868; SV 1; linear; mRNA; STD; HUM; 3022 BP. XX AC JN709868; XX DT 13-FEB-2012 (Rel. 111, Created) DT 13-FEB-2012 (Rel. 111, Last updated, Version 1) XX DE Homo sapiens alpha-synuclein transcript variant 14 (SNCA) mRNA, complete DE cds, alternatively spliced. XX KW . XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-3022 RA Beyer K., Munoz-Marmol A.M.; RT "SNCA transcript variants can be classified into four groups in dependence RT on their initial exon"; RL Unpublished. XX RN [2] RP 1-3022 RA Beyer K., Munoz-Marmol A.M.; RT ; RL Submitted (22-SEP-2011) to the INSDC. RL Department of Pathology, University Hospital Germans Trias i Pujol, RL Carretera de Canyet s/n, Badalona, Barcelona 08916, Spain XX DR MD5; b91df9c2a3ffc2dc6100b32989402972. DR Ensembl-Gn; ENSG00000145335; homo_sapiens. DR Ensembl-Tr; ENST00000394989; homo_sapiens. DR Ensembl-Tr; ENST00000505199; homo_sapiens. DR Ensembl-Tr; ENST00000618500; homo_sapiens. XX FH Key Location/Qualifiers FH FT source 1..3022 FT /organism="Homo sapiens" FT /mol_type="mRNA" FT /tissue_type="brain" FT /db_xref="taxon:9606" FT gene 1..3022 FT /gene="SNCA" FT exon 1..87 FT /gene="SNCA" FT /number=2c FT exon 88..233 FT /gene="SNCA" FT /number=3 FT CDS 113..493 FT /codon_start=1 FT /gene="SNCA" FT /product="alpha-synuclein transcript variant 14" FT /note="alternatively spliced" FT /db_xref="GOA:H6UYS0" FT /db_xref="InterPro:IPR001058" FT /db_xref="InterPro:IPR002460" FT /db_xref="UniProtKB/TrEMBL:H6UYS0" FT /protein_id="AFA25678.1" FT /translation="MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVVAEKT FT KEQVTNVGGAVVTGVTAVAQKTVEGAGSIAAATGFVKKDQLGKNEEGAPQEGILEDMPV FT DPDNEAYEMPSEEGYQDYEPEA" FT exon 234..376 FT /gene="SNCA" FT /number=5 FT exon 377..460 FT /gene="SNCA" FT /number=6 FT exon 461..3022 FT /gene="SNCA" FT /number=7 FT regulatory 755..760 FT /gene="SNCA" FT /regulatory_class="polyA_signal_sequence" FT regulatory 1036..1041 FT /gene="SNCA" FT /regulatory_class="polyA_signal_sequence" FT regulatory 1041..1046 FT /gene="SNCA" FT /regulatory_class="polyA_signal_sequence" FT regulatory 2997..3002 FT /gene="SNCA" FT /regulatory_class="polyA_signal_sequence" XX SQ Sequence 3022 BP; 932 A; 486 C; 608 G; 996 T; 0 other; gatagctgag ggcgggggtg gatgttggat ggattagaac catcacactt gggcctgctg 60 tttgcctgag tttgaaccac accccgatgt ggtgtaaagg aattcattag ccatggatgt 120 attcatgaaa ggactttcaa aggccaagga gggagttgtg gctgctgctg agaaaaccaa 180 acagggtgtg gcagaagcag caggaaagac aaaagagggt gttctctatg tagtggctga 240 gaagaccaaa gagcaagtga caaatgttgg aggagcagtg gtgacgggtg tgacagcagt 300 agcccagaag acagtggagg gagcagggag cattgcagca gccactggct ttgtcaaaaa 360 ggaccagttg ggcaagaatg aagaaggagc cccacaggaa ggaattctgg aagatatgcc 420 tgtggatcct gacaatgagg cttatgaaat gccttctgag gaagggtatc aagactacga 480 acctgaagcc taagaaatat ctttgctccc agtttcttga gatctgctga cagatgttcc 540 atcctgtaca agtgctcagt tccaatgtgc ccagtcatga catttctcaa agtttttaca 600 gtgtatctcg aagtcttcca tcagcagtga ttgaagtatc tgtacctgcc cccactcagc 660 atttcggtgc ttccctttca ctgaagtgaa tacatggtag cagggtcttt gtgtgctgtg 720 gattttgtgg cttcaatcta cgatgttaaa acaaattaaa aacacctaag tgactaccac 780 ttatttctaa atcctcacta tttttttgtt gctgttgttc agaagttgtt agtgatttgc 840 tatcatatat tataagattt ttaggtgtct tttaatgata ctgtctaaga ataatgacgt 900 attgtgaaat ttgttaatat atataatact taaaaatatg tgagcatgaa actatgcacc 960 tataaatact aaatatgaaa ttttaccatt ttgcgatgtg ttttattcac ttgtgtttgt 1020 atataaatgg tgagaattaa aataaaacgt tatctcattg caaaaatatt ttatttttat 1080 cccatctcac tttaataata aaaatcatgc ttataagcaa catgaattaa gaactgacac 1140 aaaggacaaa aatataaagt tattaatagc catttgaaga aggaggaatt ttagaagagg 1200 tagagaaaat ggaacattaa ccctacactc ggaattccct gaagcaacac tgccagaagt 1260 gtgttttggt atgcactggt tccttaagtg gctgtgatta attattgaaa gtggggtgtt 1320 gaagacccca actactattg tagagtggtc tatttctccc ttcaatcctg tcaatgtttg 1380 ctttacgtat tttggggaac tgttgtttga tgtgtatgtg tttataattg ttatacattt 1440 ttaattgagc cttttattaa catatattgt tatttttgtc tcgaaataat tttttagtta 1500 aaatctattt tgtctgatat tggtgtgaat gctgtacctt tctgacaata aataatattc 1560 gaccatgaat aaaaaaaaaa aaaaagtggg ttcccgggaa ctaagcagtg tagaagatga 1620 ttttgactac accctcctta gagagccata agacacatta gcacatatta gcacattcaa 1680 ggctctgaga gaatgtggtt aactttgttt aactcagcat tcctcacttt ttttttttaa 1740 tcatcagaaa ttctctctct ctctctctct ttttctctcg ctctcttttt tttttttttt 1800 ttacaggaaa tgcctttaaa catcgttgga actaccagag tcaccttaaa ggagatcaat 1860 tctctagact gataaaaatt tcatggcctc ctttaaatgt tgccaaatat atgaattcta 1920 ggatttttcc ttaggaaagg tttttctctt tcagggaaga tctattaact ccccatgggt 1980 gctgaaaata aacttgatgg tgaaaaactc tgtataaatt aatttaaaaa ttatttggtt 2040 tctcttttta attattctgg ggcatagtca tttctaaaag tcactagtag aaagtataat 2100 ttcaagacag aatattctag acatgctagc agtttatatg tattcatgag taatgtgata 2160 tatattgggc gctggtgagg aaggaaggag gaatgagtga ctataaggat ggttaccata 2220 gaaacttcct tttttaccta attgaagaga gactactaca gagtgctaag ctgcatgtgt 2280 catcttacac tagagagaaa tggtaagttt cttgttttat ttaagttatg tttaagcaag 2340 gaaaggattt gttattgaac agtatatttc aggaaggtta gaaagtggcg gttaggatat 2400 attttaaatc tacctaaagc agcatatttt aaaaatttaa aagtattggt attaaattaa 2460 gaaatagagg acagaactag actgatagca gtgacctaga acaatttgag attaggaaag 2520 ttgtgaccat gaatttaagg atttatgtgg atacaaattc tcctttaaag tgtttcttcc 2580 cttaatattt atctgacggt aatttttgag cagtgaatta ctttatatat cttaatagtt 2640 tatttgggac caaacactta aacaaaaagt tctttaagtc atataagcct tttcaggaag 2700 cttgtctcat attcactccc gagacattca cctgccaagt ggcctgagga tcaatccagt 2760 cctaggttta ttttgcagac ttacattctc ccaagttatt cagcctcata tgactccacg 2820 gtcggcttta ccaaaacagt tcagagtgca ctttggcaca caattgggaa cagaacaatc 2880 taatgtgtgg tttggtattc caagtggggt ctttttcaga atctctgcac tagtgtgaga 2940 tgcaaacatg tttcctcatc tttctggctt atccagtatg tagctatttg tgacataata 3000 aatatataca tatatgaaaa ta 3022 //