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EBI Dbfetch

ID   HQ405758; SV 1; linear; mRNA; STD; MUS; 766 BP.
XX
AC   HQ405758;
XX
DT   26-JUN-2011 (Rel. 109, Created)
DT   04-SEP-2011 (Rel. 110, Last updated, Version 2)
XX
DE   Mus musculus SH3 and multiple ankyrin repeat domains-like protein 3 variant
DE   c-2 (Shank3) mRNA, partial cds, alternatively spliced.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-766
RX   DOI; 10.1093/hmg/ddr212.
RX   PUBMED; 21558424.
RA   Wang X., McCoy P.A., Rodriguiz R.M., Pan Y., Je H.S., Roberts A.C.,
RA   Kim C.J., Berrios J., Colvin J.S., Bousquet-Moore D., Lorenzo I., Wu G.,
RA   Weinberg R.J., Ehlers M.D., Philpot B.D., Beaudet A.L., Wetsel W.C.,
RA   Jiang Y.H.;
RT   "Synaptic dysfunction and abnormal behaviors in mice lacking major isoforms
RT   of Shank3";
RL   Hum. Mol. Genet. 20(15):3093-3108(2011).
XX
RN   [2]
RP   1-766
RA   Wang X., Jiang Y.-H.;
RT   ;
RL   Submitted (14-OCT-2010) to the INSDC.
RL   Department of Pediatrics, Duke University, 595 LaSalle Street, Durham, NC
RL   27710, USA
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DR   Ensembl-Gn; ENSMUSG00000022623; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000039074; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000066545; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109309; mus_musculus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..766
FT                   /organism="Mus musculus"
FT                   /chromosome="15"
FT                   /map="15q"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:10090"
FT   gene            1..>766
FT                   /gene="Shank3"
FT   5'UTR           1..696
FT                   /gene="Shank3"
FT   CDS             697..>766
FT                   /codon_start=1
FT                   /gene="Shank3"
FT                   /product="SH3 and multiple ankyrin repeat domains-like
FT                   protein 3 variant c-2"
FT                   /note="SPANK-2; proSAP2; proline-rich synapse-associated
FT                   protein 2; alternatively spliced"
FT                   /db_xref="GOA:Q4ACU6"
FT                   /db_xref="InterPro:IPR001452"
FT                   /db_xref="InterPro:IPR001478"
FT                   /db_xref="InterPro:IPR001660"
FT                   /db_xref="InterPro:IPR002110"
FT                   /db_xref="InterPro:IPR011511"
FT                   /db_xref="InterPro:IPR013761"
FT                   /db_xref="InterPro:IPR020683"
FT                   /db_xref="InterPro:IPR021129"
FT                   /db_xref="MGI:MGI:1930016"
FT                   /db_xref="PDB:3O5N"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q4ACU6"
FT                   /protein_id="AEB77765.1"
FT                   /translation="MRQYDTRHETREDRTKRLFRHYT"
XX
SQ   Sequence 766 BP; 144 A; 199 C; 225 G; 198 T; 0 other;
     cttcttcact ggcaatcctt gggatccagg tgaggggggc ttgtcatctt cgggggatct        60
     ttaacagttg tctgtgtaca gcacacattt cttccatgga tggggaagac agctccccct       120
     cccatcatga ggctctctgc cgtcattggg gtcctacctt gggcactctg tcagtgagat       180
     ggaaatagtt gtaaagacca gccctcctgg tctataatgt ggcttgctcc actggctgcc       240
     ttgccatgac cctgagctct ggacagtgac tcttgggtgg atgtcagtta ccatggttgg       300
     ggggaacgtg atccctgtgg gcaggaggaa gagtatgtct ggcctctgtt tctgcctctg       360
     ccctctccca gtgtgtccat ctgtgtctgt ctgtctccca catgtccatc ctttgctgag       420
     gccatctgtt cagttctctt ctgtgtggat cctagaatct tcccaggaag aatgctaggg       480
     gggaatgctg gcttgaaaag agagcagtgg tcagggtcgt gggcaaaacc tgagccccag       540
     gtggcaggga agcaggtacc ctgctgtcct ctttttccct gacaacctgt ctggcttctc       600
     tccctagtgc tcagcattgg ggagggcggt ttctgggagg gaaccgtgaa gggccgaaca       660
     ggctggttcc cagctgactg tgtggaagaa gtgcagatgc gacagtatga cacccggcat       720
     gaaaccagag aggaccggac gaagcgtctc ttccgccact acactg                      766
//


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