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EBI Dbfetch

ID   HQ405757; SV 1; linear; mRNA; STD; MUS; 188 BP.
XX
AC   HQ405757;
XX
DT   26-JUN-2011 (Rel. 109, Created)
DT   04-SEP-2011 (Rel. 110, Last updated, Version 2)
XX
DE   Mus musculus SH3 and multiple ankyrin repeat domains-like protein 3 variant
DE   c-1 (Shank3) mRNA, partial cds, alternatively spliced.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-188
RX   DOI; 10.1093/hmg/ddr212.
RX   PUBMED; 21558424.
RA   Wang X., McCoy P.A., Rodriguiz R.M., Pan Y., Je H.S., Roberts A.C.,
RA   Kim C.J., Berrios J., Colvin J.S., Bousquet-Moore D., Lorenzo I., Wu G.,
RA   Weinberg R.J., Ehlers M.D., Philpot B.D., Beaudet A.L., Wetsel W.C.,
RA   Jiang Y.H.;
RT   "Synaptic dysfunction and abnormal behaviors in mice lacking major isoforms
RT   of Shank3";
RL   Hum. Mol. Genet. 20(15):3093-3108(2011).
XX
RN   [2]
RP   1-188
RA   Wang X., Jiang Y.-H.;
RT   ;
RL   Submitted (14-OCT-2010) to the INSDC.
RL   Department of Pediatrics, Duke University, 595 LaSalle Street, Durham, NC
RL   27710, USA
XX
DR   MD5; 27af0f10574e05299841f5c38a0574bc.
DR   Ensembl-Gn; ENSMUSG00000022623; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000039074; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000066545; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109309; mus_musculus.
DR   EuropePMC; PMC3131048; 21558424.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..188
FT                   /organism="Mus musculus"
FT                   /chromosome="15"
FT                   /map="15q"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:10090"
FT   gene            1..>188
FT                   /gene="Shank3"
FT   5'UTR           1..118
FT                   /gene="Shank3"
FT   CDS             119..>188
FT                   /codon_start=1
FT                   /gene="Shank3"
FT                   /product="SH3 and multiple ankyrin repeat domains-like
FT                   protein 3 variant c-1"
FT                   /note="SPANK-2; proSAP2; proline-rich synapse-associated
FT                   protein 2; alternatively spliced"
FT                   /db_xref="GOA:Q4ACU6"
FT                   /db_xref="InterPro:IPR001452"
FT                   /db_xref="InterPro:IPR001478"
FT                   /db_xref="InterPro:IPR001660"
FT                   /db_xref="InterPro:IPR002110"
FT                   /db_xref="InterPro:IPR011511"
FT                   /db_xref="InterPro:IPR013761"
FT                   /db_xref="InterPro:IPR020683"
FT                   /db_xref="InterPro:IPR021129"
FT                   /db_xref="MGI:MGI:1930016"
FT                   /db_xref="PDB:3O5N"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q4ACU6"
FT                   /protein_id="AEB77764.1"
FT                   /translation="MRQYDTRHETREDRTKRLFRHYT"
XX
SQ   Sequence 188 BP; 43 A; 48 C; 61 G; 36 T; 0 other;
     cttcttcact ggcaatcctt gggatccagt gctcagcatt ggggagggcg gtttctggga        60
     gggaaccgtg aagggccgaa caggctggtt cccagctgac tgtgtggaag aagtgcagat       120
     gcgacagtat gacacccggc atgaaaccag agaggaccgg acgaagcgtc tcttccgcca       180
     ctacactg                                                                188
//


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