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EBI Dbfetch

ID   GQ868649; SV 1; linear; mRNA; STD; MUS; 749 BP.
XX
AC   GQ868649;
XX
DT   12-OCT-2009 (Rel. 102, Created)
DT   12-OCT-2009 (Rel. 102, Last updated, Version 1)
XX
DE   Mus musculus strain AKR/J peroxisome proliferator activator receptor gamma
DE   mRNA, partial cds, alternatively spliced.
XX
KW   .
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-749
RA   Spencer H.E., Kovach T.K., Hamilton J.B., Kazuhiko S., McDuffie M.;
RT   "Susceptibility to Crohn's disease associated with alternative transcripts
RT   of Pparg";
RL   Unpublished.
XX
RN   [2]
RP   1-749
RA   McDuffie M., Spencer H.E.;
RT   ;
RL   Submitted (03-SEP-2009) to the INSDC.
RL   Microbiolgy, University of Virginia, 450 Ray C. Hunt Drive Box 801390,
RL   Charlottesville, VA 22908, USA
XX
DR   MD5; eed8fa19be929e2d45555b384cd36d6f.
DR   Ensembl-Gn; ENSMUSG00000000440; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000000450; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000171644; mus_musculus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..749
FT                   /organism="Mus musculus"
FT                   /chromosome="6"
FT                   /map="Pparg"
FT                   /strain="AKR/J"
FT                   /mol_type="mRNA"
FT                   /PCR_primers="fwd_seq: gatggaagaccactcgcatt, rev_seq:
FT                   gaaactggcacccttgaaaa"
FT                   /db_xref="taxon:10090"
FT   CDS             <1..>749
FT                   /codon_start=2
FT                   /product="peroxisome proliferator activator receptor gamma"
FT                   /note="nuclear receptor family member; Pparg; conventional
FT                   transcript; alternatively spliced"
FT                   /db_xref="GOA:D0EPX6"
FT                   /db_xref="InterPro:IPR001628"
FT                   /db_xref="InterPro:IPR003074"
FT                   /db_xref="InterPro:IPR003077"
FT                   /db_xref="InterPro:IPR008946"
FT                   /db_xref="InterPro:IPR013088"
FT                   /db_xref="InterPro:IPR022590"
FT                   /db_xref="MGI:MGI:97747"
FT                   /db_xref="UniProtKB/TrEMBL:D0EPX6"
FT                   /protein_id="ACX47080.1"
FT                   /translation="TVDFSSISAPHYEDIPFTRADPMVADYKYDLKLQEYQSAIKVEPA
FT                   SPPYYSEKTQLYNRPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK
FT                   LIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDI
FT                   DQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGED
FT                   KIKFKHITPLQEQSKEVAIRIFQGCQF"
FT   misc_feature    116..421
FT                   /note="Region: DNA-binding domain"
FT   misc_feature    422..748
FT                   /note="Region: ligand-binding domain"
XX
SQ   Sequence 749 BP; 222 A; 177 C; 170 G; 180 T; 0 other;
     cacagttgat ttctccagca tttctgctcc acactatgaa gacattccat tcacaagagc        60
     tgacccaatg gttgctgatt acaaatatga cctgaagctc caagaatacc aaagtgcgat       120
     caaagtagaa cctgcatctc caccttatta ttctgaaaag acccagctct acaacaggcc       180
     tcatgaagaa ccttctaact ccctcatggc cattgagtgc cgagtctgtg gggataaagc       240
     atcaggcttc cactatggag ttcatgcttg tgaaggatgc aagggttttt tccgaagaac       300
     catccgattg aagcttattt atgataggtg tgatcttaac tgccggatcc acaaaaaaag       360
     tagaaataaa tgtcagtact gtcggtttca gaagtgcctt gctgtgggga tgtctcacaa       420
     tgccatcagg tttgggcgga tgccacaggc cgagaaggag aagctgttgg cggagatctc       480
     cagtgatatc gaccagctga acccagagtc tgctgatctg cgagccctgg caaagcattt       540
     gtatgactca tacataaagt ccttcccgct gaccaaagcc aaggcgaggg cgatcttgac       600
     aggaaagaca acggacaaat caccatttgt catctacgac atgaattcct taatgatggg       660
     agaagataaa atcaagttca aacatatcac ccccctgcag gagcagagca aagaagtggc       720
     catccgaatt tttcaagggt gccagtttc                                         749
//


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