ID GQ868647; SV 1; linear; mRNA; STD; MUS; 749 BP.
XX
AC GQ868647;
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DT 12-OCT-2009 (Rel. 102, Created)
DT 12-OCT-2009 (Rel. 102, Last updated, Version 1)
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DE Mus musculus strain SAMP1/YitFcs peroxisome proliferator activator receptor
DE gamma mRNA, partial cds, alternatively spliced.
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KW .
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-749
RA Spencer H.E., Kovach T.K., Hamilton J.B., Kazuhiko S., McDuffie M.;
RT "Susceptibility to Crohn's disease associated with alternative transcripts
RT of Pparg";
RL Unpublished.
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RN [2]
RP 1-749
RA McDuffie M., Spencer H.E., McDuffie M.;
RT ;
RL Submitted (03-SEP-2009) to the INSDC.
RL Microbiolgy, University of Virginia, 450 Ray C. Hunt Drive Box 801390,
RL Charlottesville, VA 22908, USA
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DR MD5; fe3c58fc4c5d70ac52962c3ec9ff5923.
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FH Key Location/Qualifiers
FH
FT source 1..749
FT /organism="Mus musculus"
FT /chromosome="6"
FT /map="Pparg"
FT /strain="SAMP1/YitFcs"
FT /mol_type="mRNA"
FT /PCR_primers="fwd_seq: gatggaagaccactcgcatt, rev_seq:
FT gaaactggcacccttgaaaa"
FT /db_xref="taxon:10090"
FT CDS <1..>749
FT /codon_start=2
FT /product="peroxisome proliferator activator receptor gamma"
FT /note="nuclear receptor family member; Pparg; conventional
FT transcript; alternatively spliced"
FT /db_xref="GOA:D0EPX6"
FT /db_xref="InterPro:IPR001628"
FT /db_xref="InterPro:IPR003074"
FT /db_xref="InterPro:IPR003077"
FT /db_xref="InterPro:IPR013088"
FT /db_xref="InterPro:IPR022590"
FT /db_xref="InterPro:IPR035500"
FT /db_xref="MGI:MGI:97747"
FT /db_xref="UniProtKB/TrEMBL:D0EPX6"
FT /protein_id="ACX47078.1"
FT /translation="TVDFSSISAPHYEDIPFTRADPMVADYKYDLKLQEYQSAIKVEPA
FT SPPYYSEKTQLYNRPHEEPSNSLMAIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLK
FT LIYDRCDLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRMPQAEKEKLLAEISSDI
FT DQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGED
FT KIKFKHITPLQEQSKEVAIRIFQGCQF"
FT misc_feature 116..421
FT /note="Region: DNA-binding domain"
FT misc_feature 422..748
FT /note="Region: ligand-binding domain"
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SQ Sequence 749 BP; 221 A; 177 C; 171 G; 180 T; 0 other;
cacagttgat ttctccagca tttctgctcc acactatgaa gacattccat tcacaagagc 60
tgacccaatg gttgctgatt acaaatatga cctgaagctc caagaatacc aaagtgcgat 120
caaagtagaa cctgcatctc caccttatta ttctgaaaag acccagctct acaacaggcc 180
tcatgaagaa ccttctaact ccctcatggc cattgagtgc cgagtctgtg gggataaagc 240
atcaggcttc cactatggag ttcatgcttg tgaaggatgc aagggttttt tccgaagaac 300
catccgattg aagcttattt atgataggtg tgatcttaac tgccggatcc acaaaaaaag 360
tagaaataaa tgtcagtact gtcggtttca gaagtgcctt gctgtgggga tgtctcacaa 420
tgccatcagg tttgggcgga tgccacaggc cgagaaggag aagctgttgg cggagatctc 480
cagtgatatc gaccagctga acccagagtc tgctgatctg cgagccctgg caaagcattt 540
gtatgactca tacataaagt ccttcccgct gaccaaagcc aaggcgaggg cgatcttgac 600
aggaaagaca acggacaaat caccatttgt catctacgac atgaattcct taatgatggg 660
agaagataaa atcaagttca aacatatcac ccccctgcag gagcagagca aagaggtggc 720
catccgaatt tttcaagggt gccagtttc 749
//
