Dbfetch
ID DQ504162; SV 1; linear; mRNA; STD; MUS; 2376 BP.
XX
AC DQ504162;
XX
DT 02-OCT-2006 (Rel. 89, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 5)
XX
DE Mus musculus glucocorticoid receptor (Nr3c1) mRNA, complete cds.
XX
KW .
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-2376
RX PUBMED; 17012242.
RA Xu D., Buehner A., Xu J., Lambert T., Nekl C., Nielsen M.K., Zhou Y.;
RT "A polymorphic glucocorticoid receptor in a mouse population may explain
RT inherited altered stress response and increased anxiety-type behaviors";
RL FASEB J. 20(13):2414-2416(2006).
XX
RN [2]
RP 1-2376
RA Xu D., Xu J., Nielsen M.K., Zhou Y.;
RT ;
RL Submitted (19-APR-2006) to the INSDC.
RL Vet. & Biomed. Sci., University of Nebraska-Lincoln, 1901 Vine St.,
RL Lincoln, NE 68588-0665, USA
XX
DR MD5; 9288014b7df264d08977e159f5035c98.
XX
FH Key Location/Qualifiers
FH
FT source 1..2376
FT /organism="Mus musculus"
FT /strain="outbred cross"
FT /mol_type="mRNA"
FT /note="Nebraska composite formed from four-way cross of
FT outbred stocks (CF-1, ICR, NIH and CFW(Sw))"
FT /db_xref="taxon:10090"
FT gene 1..2376
FT /gene="Nr3c1"
FT CDS 1..2376
FT /codon_start=1
FT /gene="Nr3c1"
FT /product="glucocorticoid receptor"
FT /note="nuclear receptor; polymorphic form"
FT /db_xref="GOA:Q06VW2"
FT /db_xref="InterPro:IPR000536"
FT /db_xref="InterPro:IPR001409"
FT /db_xref="InterPro:IPR001628"
FT /db_xref="InterPro:IPR001723"
FT /db_xref="InterPro:IPR013088"
FT /db_xref="InterPro:IPR035500"
FT /db_xref="MGI:MGI:95824"
FT /db_xref="UniProtKB/TrEMBL:Q06VW2"
FT /protein_id="ABF57998.1"
FT /translation="MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSAS
FT SPSVAAASQADSKQQRILLDFSKGSASNAQQQQQQQQQQQQQQQQPQPDLSKAVSLSMG
FT LYMGETETKVMGNDLGYPQQGQLGLSSGETDFRLLEESIANLNRSTSRPENPKSSTPAA
FT GCATPTEKEFPQTHSDPSSEQQNRKSQPGTNGGSVKLYTTDQSTFDILQDLEFSAGSPG
FT KETNESPWRSDLLIDENLLSPLAGEDDPFLLEGDVNEDCKPLILPDTKPKIQDTGDTIL
FT SSPSSVALPQVKTEKDDFIELCTPGVIKQEKLGPVYCQASFSGTNIIGNKMSAISVHGV
FT STSGGQMYHYDMNTASLSQQQDQKPVFNVIPPIPVGSENWNRCQGSGEDNLTSLGAMNF
FT AGRSVFSNGYSSPGMRPDVSSPPSSSSTATGPPPKLCLVCSDEASGCHYGVLTCGSCKV
FT FFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIKGIQQ
FT ATAGVSQDTSENANKTIVPAALPQLTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTT
FT LNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQASGNLL
FT CFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGL
FT KSQELFDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQT
FT FLDKSMSIEFPEMLAEIITNQIPKYSNGNIKKLLFHQK"
FT misc_difference 222
FT /gene="Nr3c1"
FT /replace="a"
FT /note="compared to NM_008173"
FT misc_difference 247..270
FT /gene="Nr3c1"
FT /replace=""
FT /note="compared to NM_008173; CAG expansion; eight
FT additional CAG triplets"
FT misc_difference 468
FT /gene="Nr3c1"
FT /replace="t"
FT /note="compared to NM_008173"
XX
SQ Sequence 2376 BP; 692 A; 546 C; 568 G; 570 T; 0 other;
atggactcca aagaatcctt agctccccct ggtagagacg aagtccccag cagtttgctt 60
ggccggggga ggggaagcgt gatggacttg tataaaaccc tgaggggtgg agctacagtc 120
aaggtttctg cgtcttcacc ctcagtggct gctgcttctc aggcagattc caagcagcag 180
aggattctcc ttgatttttc aaaaggctca gcaagcaatg cgcagcagca gcagcagcag 240
cagcagcagc agcagcagca gcagcagcag ccgcagccag atttatccaa agccgtttca 300
ctgtccatgg gactgtatat gggagagacc gaaacaaaag tgatggggaa tgacttgggc 360
tacccacagc agggccagct tggcctctcc tctggggaaa cagactttcg gcttctggaa 420
gaaagcattg caaacctcaa taggtcgacc agccgtccag agaaccccaa gagttcaaca 480
cctgcagctg ggtgtgctac cccgacagag aaggagtttc cccagactca ctctgatcca 540
tcttcagaac agcaaaatag aaaaagccag cctggcacca acggtggcag tgtgaaattg 600
tataccacag accaaagcac ctttgacatc ttgcaggatt tggagttttc tgccgggtcc 660
ccaggtaaag agacaaacga gagtccttgg aggtcagacc tgttgataga tgaaaacttg 720
ctttctcctt tggcgggaga agatgatcca ttccttctgg aaggggacgt gaatgaggat 780
tgcaagcctc ttattttacc ggacactaaa cctaaaattc aggatactgg agatacaatc 840
ttatcaagcc ccagcagtgt ggcactgccc caagtgaaaa cagagaaaga tgatttcatt 900
gagctttgca cccctggggt aattaagcaa gagaaactgg gcccggttta ttgccaggca 960
agcttttctg ggacaaatat aattgggaat aaaatgtctg ccatttctgt tcatggcgtg 1020
agtacctctg gaggacagat gtaccactat gacatgaata cagcatccct ttctcagcag 1080
caggatcaga agcctgtttt taatgtcatt ccaccaattc ctgttggttc tgaaaactgg 1140
aataggtgcc aagggtctgg agaggacaac ctgacttcct tgggggctat gaacttcgca 1200
ggccgctcag tgttttctaa tggatattca agccctggaa tgagaccaga tgtgagttct 1260
cctccgtcca gctcctccac agcaacggga ccacctccca aactctgcct ggtgtgctcc 1320
gatgaagctt cgggatgcca ttatggggtg ctgacgtgtg gaagctgtaa agtcttcttt 1380
aaaagagcag tggaaggaca gcacaattac ctttgtgctg gaagaaatga ttgcatcatt 1440
gataaaattc gaagaaaaaa ctgtccagca tgccgctatc gaaaatgtct tcaagctgga 1500
atgaacctgg aagctcgaaa aacgaagaaa aaaattaaag gaattcagca agccactgca 1560
ggagtctcac aagacacttc tgaaaacgct aacaaaacaa tagttcctgc cgcgctgcca 1620
cagcttaccc ctaccctggt gtcactgctg gaggtgatcg agcctgaggt gttatatgca 1680
ggatatgaca gctctgttcc agactcagca tggagaatta tgaccacgct caacatgtta 1740
ggtgggcgcc aagtgattgc cgcagtgaaa tgggcaaagg cgataccagg attcagaaac 1800
ttacacctgg atgaccaaat gacccttcta cagtactcat ggatgtttct catggcattt 1860
gccctgggtt ggagatcata cagacaagca agtggaaacc tgctatgctt tgctcctgat 1920
ctgattatta atgagcagag aatgactcta ccctgcatgt atgaccaatg taaacacatg 1980
ctgtttatct ccactgaatt acaaagattg caggtatcct atgaagagta tctctgtatg 2040
aaaaccttac tgcttctctc ctcagttcct aaggaaggtc tgaagagcca agagttattt 2100
gatgagattc gaatgactta tatcaaagag ctaggaaaag ccattgtcaa aagggaagga 2160
aactccagtc agaattggca gcggttttat caactgacaa aacttttgga ctccatgcat 2220
gatgtggttg aaaatctcct tagctactgc ttccaaacat ttttggataa gtccatgagt 2280
attgaattcc cagagatgtt agctgaaatc atcactaatc agataccaaa atactcaaat 2340
ggaaatatca aaaagcttct gtttcatcag aaatga 2376
//
