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EBI Dbfetch

ID   BX813327; SV 2; linear; genomic DNA; STD; MUS; 5033 BP.
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AC   BX813327;
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DT   18-NOV-2003 (Rel. 77, Created)
DT   13-DEC-2012 (Rel. 115, Last updated, Version 10)
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DE   Mouse DNA sequence from clone RP23-458O9 on chromosome X
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KW   GAP_CLOSURE; HTG.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
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RN   [1]
RP   1-5033
RG   Genome Reference Consortium
RA   Heath P.;
RT   ;
RL   Submitted (13-DEC-2012) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: grc-help@sanger.ac.uk Clone requests: Geneservice
RL   (http://www.geneservice.co.uk/) and BACPAC Resources
RL   (http://bacpac.chori.org/)
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DR   MD5; 9127228cb867aa28730132b5a5ba2091.
DR   ENA-CON; GL456200.
DR   Ensembl-Gn; ENSMUSG00000031343; mus_musculus.
DR   Ensembl-Scaffolds; BX813327.2:1-5033; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000114554; mus_musculus.
DR   GOA; B1AVY2.
DR   InterPro; IPR001390; GABAAa_rcpt.
DR   InterPro; IPR005433; GABBAa3_rcpt.
DR   InterPro; IPR006028; GABAA/Glycine_rcpt.
DR   InterPro; IPR006029; Neurotrans-gated_channel_TM.
DR   InterPro; IPR006201; Neur_channel.
DR   InterPro; IPR006202; Neur_chan_lig-bd.
DR   InterPro; IPR018000; Neurotransmitter_ion_chnl_CS.
DR   MGI; MGI:95615; Gabra3.
DR   UniProtKB/TrEMBL; B1AVY2; B1AVY2_MOUSE.
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CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: grc-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   Sequence from the Mouse Genome Sequencing Consortium whole genome shotgun
CC   may have been used to confirm this sequence. Sequence data from the whole
CC   genome shotgun alone has only been used where it has a phred quality of at
CC   least 30.
CC   
CC   RP23-458O9 is from the RPCI-23 Mouse BAC Library
CC   constructed by the group of Pieter de Jong.
CC   For further details see http://bacpac.chori.org/
CC   VECTOR: pBACe3.6
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FH   Key             Location/Qualifiers
FH
FT   source          1..5033
FT                   /organism="Mus musculus"
FT                   /chromosome="X"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-23"
FT                   /clone="RP23-458O9"
FT                   /db_xref="taxon:10090"
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SQ   Sequence 5033 BP; 1877 A; 815 C; 868 G; 1473 T; 0 other;
     aaataaaaat cagcaaaatc gataaatgag actagacaag aaaaacaaat taatgtgagt        60
     taatatgaga aatgagtgag tgatataatt atagatccaa tagttcaagt tgatatttaa       120
     aaagtagtaa atgcgtgtgt tgctcagtcc aaattggcac atctacaata caatccctgc       180
     agttaatgct cagggatcag ctctgaagag gaactggaaa gactgtaaaa tccagaggaa       240
     cagggagctt tccataagat catgtcacta gcaatgtcag agaagctaca cactagcagc       300
     atcaaaacta tattatcaga cacgatgtct gtttgctttg ctgtttataa tgcagtaaca       360
     ctggtgttac tgatgatgat aaactggttt aaaatagcag aatacaaact aacaagccaa       420
     ctcaaggacc atagaggagg ttcagaatca ggaaaatgta gtaaaacatg aggactaagt       480
     gcagcattaa atataaaaag ccacagtaat aaacaaccat gacactgggg tagacagtct       540
     ttatgtggaa gctgtcaatt atacaattag aaataaaatt ataaaacaaa taaaacaaaa       600
     tgtacttgac ttcatgaaat tcataggcat atggaactag aaaatatcat cctgagtgag       660
     gaaatcagtc acaaaagaac acacatagta tgcactcact gataagtgga tattagccca       720
     aacgctcagg atacccacga tacaactcac agaccacatg aaacttaaca agaaggaaga       780
     ccaaagtatg gatgcttcaa tcctacttag aagggggaac aaaataatca ccggaggtag       840
     agggaggaag gggcctggga gggaaagacg agggggaggg aaaagggggt gcaaaaagta       900
     cttgaataga tgatccaagt gccttaaaag ataatcatag cccattgtgt ttggtggcat       960
     taattacttt tattactttt attttaattg tatgtctaca aacatacata ttaaaattga      1020
     acacaaaaaa tggttctctt aacatagtat catgatattt cccatgatct ttattcacta      1080
     atatcacacc tctgtatatg ttaagatcac attgccaaag tgcctttgca gatggtaata      1140
     aatgataatc taatatgttt aacataaagg gaatacctta tattctccaa gtgggtcctt      1200
     taaaggagaa aagcaacaca gaataaaaac cggaagagag tctaaagtgg tgagaactaa      1260
     ctgctgcttt gaagataaaa agatccatga aaagcaaata taggtgacct tgaaaagcta      1320
     agaaaatgct ctggccaatg gccagcaaga aaattgcgac ctgagttcag caatcactaa      1380
     aaatgaaatc tatcaataat ttgagcaatc ttggaagcaa atttgtcatc aaagcttcta      1440
     gaaacaacac attgttgata gcattttaac tttacagact ttttaaatct attttttcaa      1500
     tgtttattgc tttaaagtgt gctagttgtg ataggttttt atatcagtga taaaaaatta      1560
     atacacttgt ctccatctct gagagaaggg taattttttg tttctttttt attgtaaaat      1620
     gatttaaaag acaaatataa ttgttgataa aatacaaata taattgttga ttatatatat      1680
     ttgactaaag tagataatat atgataggta tgcaatcagt gattatgttg ttctaataat      1740
     aatttctgta tattcatgat atactttggc atctgttatc atattttatc cttaacccaa      1800
     tcaggatatg taggaatgat aagaaagttt caacctaaaa agatataaat ctaaaatatg      1860
     aagagatttt tacttgctca gaaagcaata ccagaatgtt agagaaaaaa aaaactaagc      1920
     tcaaattgaa taattttggt tacatagtat tttcctagtt catttaaagt tgaaggtgcc      1980
     cataggattg gagagaattc agttatattt ttaggaggga aagaaatact tcttggccaa      2040
     tttgctattt gatatctccc atataacaaa gagccagcct tgtttctaga aaccaatcct      2100
     aagcatgtgc aagaaatata atttcactat ggatctggtg ggaaagcatt ttaagagagc      2160
     agcagagaat gtacgataga gagatttgga taatgccatg tacaaaccag cactaaggga      2220
     tttaaaaatc tgatatagct gtccaaagaa caaaaaccat gtagttctta aacccagggt      2280
     gctttggttt cagccaaagc cattaatcct cttccctgct tcctgcctct tcagcttact      2340
     cacatacccc tcccaacgga gctctacagt tcagtttatt tcaaagttca agtatctcag      2400
     atagaaaccg agcatgatac ttgaaattag aaagcaacca tgggtaacaa aaacaaaggt      2460
     tatctaaggt attttaatat atccaaataa agaaactcaa gactaaaagt tcacccccag      2520
     gaatactatt tgcatctaag taaatggtga accaatgcac aatttgtatg ccagaaactg      2580
     atgtatagag gggaacaaac acaccagctt tccctctgta cagactaaat caatgccatg      2640
     agcaaatgct gatctctaca gcaccctaac ctcatctgta cacccaggta gaaaaccacc      2700
     acatggtatc tcttttgctg caaagataaa tttatggagt agattatata ttgtctctga      2760
     gtttaaagtc cttcatttgc aaatagatcc caggttttgt ttgtttgttt gtttgtttgt      2820
     ttgtttgttt tgttttgttt tttgaaggat gaatgagtca aactagacaa tggtggaaaa      2880
     tgtcccacag aggctcatgt agtttaacac gtagtcctcg gctggtaaca ttgttttgat      2940
     atgaaagtag aatctgtgaa actgtgaccc agatgacaga agtgggttgc taaggttgag      3000
     tttcaaggat atcttcttct ggctctggct agagaattcc tgtttctgac tgagacattc      3060
     cttgctgaga catgagcaag ccatactata agttcttttc gtgcctgtca caaaataaat      3120
     gtctcccttc agatactttt gtcaataatt tggtcatagc aatgaaaaaa tcagttaata      3180
     taataactaa acttccagat ggaaaattat ataagccaaa ggaatatcaa ctaagtatta      3240
     aacaagaata tgaccactta tttcctaggt caaagctatc cttaggatca aaaaatctcc      3300
     aacttgaaca attatatagt cataattaaa gaaaatttta aaaatgtaga cagtcaaata      3360
     taataacaaa ttataaatga gatagcccat tacatagtta ttgactttat ggcaagtaac      3420
     tgatagtatg ccacaaatag aactaaagat tttttttttc aaagtaaaat cttttccagg      3480
     ggcagaaaag aactaacatt tgtttcaagt aagaattaaa taaccgaaac aacactatga      3540
     gcactgagcc atcagtctac tggataataa atcagtcatg atttgaaaga ccaaaaaagt      3600
     ataaaattag aaacatgaga ttgtaagcca gcaagctcgc tccaccatta aatatgcttg      3660
     ctacaaagcc ttatgacctg agtctgaccc ccaggaccca caaaatgaaa gcaaagaact      3720
     actaacttct acaagttgac ctccacaagt atgtcatgat acacatgcac acatactcac      3780
     aagtaaatca aaagatgtag taacttttta agaattatgc aaactacaaa tggttgatat      3840
     tccaacatta taaagaatat ttgaagaaaa gtttaaccaa aagccttttt aacgttgaaa      3900
     aatggctatt ttcctgttat aatcagcgtc acagtgttta ttctcaaaac tcttacaatg      3960
     acagtggaat cttaagcagt atagcaagaa atgacagtgg aaaggggaaa atggaaaggc      4020
     tgaaagtaaa gcaaggccag attcctataa ctaactaaca aacacagact aacatacact      4080
     aaaaaatctg cacactgata ttaatactag ccctattatt tttttcattt tgctgtacag      4140
     ttagttttaa gaacacaatt ttgtaatagt tagttgttaa cagaaatgta tatacattaa      4200
     tgtgactgta aaatttaaaa tatttgaaga tttctgtcac tgcacatgat aaccaataga      4260
     tttttgaagg cttatagtat tttttgcaaa catgtaaaca tatatttaga ctttgtgtga      4320
     gcatgtatgt aatgtatgca caagtatgtt tgcttgctca tgtggatact caagcatttg      4380
     tatgtctgtg tgtggaagcc agagagcaaa gtcaggtatc ttcctctaga tctagtctta      4440
     acagttccaa aattaggaca acacaaaaaa aaatttcatt agataaacaa attcaactat      4500
     tctccttctt cagaataaag ctcagcactg agagaaaatg attactgata caaggaccaa      4560
     tttgcagtga actcaaagag atcatgcaga agacatcaat atctcatcat agagaataaa      4620
     gaattttctt agcatcatat ggcattacaa agtgcaaatt caaacaacca tgacttagtc      4680
     tttccttttg taagaatggt tgaaatacaa gactttgaaa acaccaaatg cttattaagg      4740
     gtatggagaa atagcagagc tcattcatta ctggtgagaa tgaaagatga gaggataact      4800
     ttcaaaaact ggcagttact ttcaaatcca aacatattcc caaatataat aaaggtttta      4860
     aacttttgga tatttatcca agtaagttga aaacctatat acatatgaaa gtctatacat      4920
     aaatgttgac atcagcttta tatataatga ctgaaagttg gaggcaatca gtacatactt      4980
     atagaaatga atgccctgtg acacattcat ataattaaat atcatttgtt acc             5033
//


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