spacer

EBI Dbfetch

ID   BX323081; SV 3; linear; genomic DNA; STD; MUS; 3994 BP.
XX
AC   BX323081;
XX
DT   07-APR-2003 (Rel. 75, Created)
DT   13-DEC-2012 (Rel. 115, Last updated, Version 17)
XX
DE   Mouse DNA sequence from clone RP24-294L19 on chromosome 11
XX
KW   GAP_CLOSURE; HTG.
XX
OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus; Mus.
XX
RN   [1]
RP   1-3994
RG   Genome Reference Consortium
RA   Pelan S.;
RT   ;
RL   Submitted (13-DEC-2012) to the INSDC.
RL   Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, CB10 1SA, UK.
RL   E-mail enquiries: grc-help@sanger.ac.uk Clone requests: Geneservice
RL   (http://www.geneservice.co.uk/) and BACPAC Resources
RL   (http://bacpac.chori.org/)
XX
DR   MD5; 6a3eeb8b546a569c89dc5575a438a556.
DR   ENA-CON; GL456157.
DR   Ensembl-Gn; ENSMUSG00000034354; mus_musculus.
DR   Ensembl-Scaffolds; BX323081.3:1-3994; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000040448; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000109943; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000123506; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000128256; mus_musculus.
DR   Ensembl-Tr; ENSMUST00000130716; mus_musculus.
DR   GOA; B1ATD4.
DR   GOA; B1ATD5.
DR   GOA; M0QW74.
DR   GOA; R4GML8.
DR   InterPro; IPR000306; Znf_FYVE.
DR   InterPro; IPR010569; Myotubularin-like_Pase_dom.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   InterPro; IPR016130; Tyr_Pase_AS.
DR   InterPro; IPR017455; Znf_FYVE-rel.
DR   InterPro; IPR029021; Prot-tyrosine_phosphatase-like.
DR   MGI; MGI:1921552; Mtmr3.
DR   UniProtKB/TrEMBL; B1ATD4; B1ATD4_MOUSE.
DR   UniProtKB/TrEMBL; B1ATD5; B1ATD5_MOUSE.
DR   UniProtKB/TrEMBL; M0QW74; M0QW74_MOUSE.
DR   UniProtKB/TrEMBL; R4GML8; R4GML8_MOUSE.
XX
CC   -------------- Genome Center
CC   Center: Wellcome Trust Sanger Institute
CC   Center code: SC
CC   Web site: http://www.sanger.ac.uk
CC   Contact: grc-help@sanger.ac.uk
CC   --------------
CC   
CC   This sequence was finished as follows unless otherwise noted: all regions
CC   were either double-stranded or sequenced with an alternate chemistry or
CC   covered by high quality data (i.e., phred quality >= 30); an attempt was
CC   made to resolve all sequencing problems, such as compressions and repeats;
CC   all regions were covered by at least one subclone; and the assembly was
CC   confirmed by restriction digest, except on the rare occasion of the clone
CC   being a YAC.
CC   
CC   Sequence from the Mouse Genome Sequencing Consortium whole genome shotgun
CC   may have been used to confirm this sequence. Sequence data from the whole
CC   genome shotgun alone has only been used where it has a phred quality of at
CC   least 30.
CC   
CC   RP24-294L19 is from a Male (C57BL/6J) mouse BAC Library
CC   VECTOR: pTARBAC1
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..3994
FT                   /organism="Mus musculus"
FT                   /chromosome="11"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-24"
FT                   /clone="RP24-294L19"
FT                   /db_xref="taxon:10090"
XX
SQ   Sequence 3994 BP; 1443 A; 796 C; 678 G; 1077 T; 0 other;
     tctctgagtt tgaggccagt ctggtctaca aagttagttc taggacagcc agagaaaccc        60
     tgtctcaaaa aaaaaaaaga agcactcagg aggcaccggc aggtggatct ttgagttcaa       120
     agccagcttg gtctaagaat tccaggacag ccagggctcc acaaaaatcc tgtcttgaaa       180
     aacaatacag ctatggtctt gcatggtggc acatatttta attccagcac tcagataaca       240
     gaagtaggta tgtcagtctg tgagttcaaa gccatccaac ttaacataca tagttctagg       300
     acagtaaaga ctacgtagag aaatctcatt tcaaaaaacc aaaaaacaaa ttatatatat       360
     atataagctt atgcagtttt agtaaataaa gccttcacta aaaacatgta aaagataatt       420
     taatatccaa gatgagtagg ctatacatat aaaataaaaa aaaaattcta gacattttag       480
     gatatattat gtaattagga tctattatgt aattcaattt aaataataaa gccgagatat       540
     tccctaagaa gtagatttaa acagcttaca tttaagttag aaaaagaaca ttatcttaaa       600
     ccactttatg caaaaaaaaa aaacaaacaa acaaacaaag aaaaaaagag ggcccaagca       660
     ccaaaccaca aaccatacaa cctctaacat agaatgtaac actggtttag catgctcaag       720
     actctgagtc agtcctcaac acagttacag actcaagaaa tactgcagag ctgaaacgct       780
     aagaaaatgg atctcccttt attataccaa tatatcctcc tgcctaaatc ttcccctgct       840
     acttatggtc ctggaataaa taatctatca tttttcagta tttttgattc ttgcatttcc       900
     ttctctaacc ctgaatgttg cctagttgaa agaagataat gttgtcatta tcaagtaatg       960
     acaatatcat cactacaaac agcaaaaaca tagcccttac cactggctag ctactgcaat      1020
     agacacttgc taaatcctca caggagtgtt attattccca tttctaaaaa gaaaacagtc      1080
     agagaagtta aggaggttgc cctaaaatca taggaaaatt ttactgacag actttgataa      1140
     ccatcctact accattcatc ctattgacaa tttaaaagcc actaaaaaca aaatatgact      1200
     ttaacactaa ggcagtttac atattcatta aaaagtatgt atgcattaac ttctttaatt      1260
     ttaaaaaatt ctgaggctga caagctggct caatgcatga aggtacctgc tagcaaacac      1320
     aatgacctga gttctaaccc tagggtgcac gggtgaaact gagctaactc acacaacttg      1380
     tctgtcccct gacctgaggg catgcaaatg aacacaaaca aacaacacaa taaaaatagt      1440
     taattttaaa aaagtattag tatgttctgt gtatttggct atgtatgtat ctgtgtacca      1500
     aatatgtctg atgcttttgg agtacagaag agagcctctc ctcaaacaag ctacagatga      1560
     ttgagtgcca gccactgtat ggatgctgag aatcaaatct gagtcttttg gataaacttt      1620
     ttaaataaaa gaaaattttt gctttagagg taacagttta agaatactca tgtaaacaag      1680
     ttactcccat ttattctcta agtgggtttt tctagaagtg aagtttgcta aactaacaat      1740
     gctctatgaa aattcccagc cttttcagat tctgtagtaa agatacaaaa ggactaggca      1800
     tgttcgaccc aaggttcaca cgtgtcccag aacagagtat gcccaaatac acttatagtc      1860
     aatgtcaagt cacaacatca aaatgttgga tcagagccag gcagtggtag tacacagctt      1920
     taatcccagc actcggaaca ggaggcagag gcaggtgagt ctcttgagtt caaggccagt      1980
     cttatctaca gagtgaattc caggatagcc aaggttacac agagaaaccc tgtcttaaaa      2040
     aaacaaacaa aagggctgga gagatggctc agtggttaag agcactagca ctgactgctc      2100
     ttccagaggg cctggattca attcccagaa accaaatggt ggctcacagc ccaaccacta      2160
     gtctgatgcc ctcttctggt gtgtctaaag acagctacaa atgtactcat ataaattaaa      2220
     taaataaaac tttaaaacat ttggtatagc attggaaatg taaatgagct aaatacctaa      2280
     taaaaaaaaa tggaaaaaaa aaaaaaaaac tttaaaacaa acaaaaagct gaatcagcta      2340
     gatattatat ttgagtgtac atacatgtac aggtcaagta tcaatatcaa gtgtcttact      2400
     caattactct ctactttatt ttctgagaca ggctctctca ctgaacccag aacccatgat      2460
     tccactgaga cagtgaaatc tcttgcctta accagcactg ggattataga catacacctg      2520
     gttttttatg tgggtgatag gatacaaact cttcaggctt atatacgttc tatcaagcac      2580
     gcttccaact gagtcatctc ttcagccaca ggcactttac tttttccatc aaaacaataa      2640
     atacatgggc atacatacat gtgtatactt tctagcacct ttagttgtaa ttatcaaaat      2700
     ctaaaaacaa tacaataaaa taagagatat aaactgtggc atattcatac aacaaaatac      2760
     tattctgaag taaaaactga ttactgataa ccaaaaacag gatgagtatc aaatcacact      2820
     atatcaagta caatatgcca tattataacc tctgcctttc aaaggcagaa tcactgcatg      2880
     ttcaaagcca ccctagtata cacaggaagt ttcaggacag ccagaaatac atatagtgag      2940
     atgccatctc actataaagg ctgcatgctg tgtggcccat acatagaatt ttaaaataga      3000
     caaagccata aaaagaaaac aaacagccag agaccagact aactacacaa aggactgcaa      3060
     gaaaagtgtt tgtgattatc aaataaacta ttcttccttg atcataatag tttttacaaa      3120
     attatgtgtc taaaactaaa cactaggggc tggagagatg gctcagcggt taagagcact      3180
     cactgctctt ccaaaagtcc tgagttcaaa tcccagcaac cacatggtgg ctcacagcca      3240
     cccgtaatga tatctgatgc ccccttctgg tgtgtctgaa ggcagctaca gtgtacttat      3300
     aataataaat aaatatttaa aaaactaaac actgctatat gtaaagtata tcttagtaaa      3360
     gaataatttt aaaccataca tgtgatagaa tcttaattat ttccagcagc agaaacaaga      3420
     tattgggtgg caggcaagaa caaaaaactt ttctccatta tacaccttgc ctagaaatct      3480
     aaagaatgtt tgtaaaatct ttcaagaggc tgagagatgg cccagcggtt aagggtgctt      3540
     gctgctcttc cagacgactt ggttctgagt acttacatga cagttcacaa gagtctgcaa      3600
     ctccaattac agagaaccca gtaccctctc ctgacctcta caggcaccag gtacacatgt      3660
     ggtacacaga gatacataga gagaacacac tcactcatgt taaaataaag aaatgaactg      3720
     aaaaatcttt cacactaact catgtgccag agagaggagg ttggaggaca acatgcaaga      3780
     gtcagttctc tccttccata atgtgagctg cagagactaa aatctagttg ttagtcttgg      3840
     tggtaaatgt cttcactcac tgaaccacct cgccaacccc aacttatttt actttattta      3900
     gtattgcatg tgtatggcat gtgtacatgt gaaggtcaga ggaaactttt taggagtaag      3960
     ctttctttcc accctaggtt ccaaggatca aact                                  3994
//


spacer
spacer