Dbfetch
ID BC131654; SV 1; linear; mRNA; STD; MUS; 3582 BP.
XX
AC BC131654;
XX
DT 31-JAN-2007 (Rel. 90, Created)
DT 24-SEP-2008 (Rel. 97, Last updated, Version 2)
XX
DE Mus musculus desmoglein 2, mRNA (cDNA clone MGC:150161 IMAGE:40110531),
DE complete cds.
XX
KW MGC.
XX
OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
XX
RN [1]
RP 1-3582
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
XX
RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-3582
RG NIH MGC Project
RA ;
RT ;
RL Submitted (29-JAN-2007) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
XX
DR MD5; a72946f3eb50ee4b9337ea4a5a06a1f6.
DR Ensembl-Gn; ENSMUSG00000044393; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0024180; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0024144; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0024113; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0024144; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0023912; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0024587; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0023386; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0023880; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0024012; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0023978; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0024094; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0024006; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0024634; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0023131; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0023451; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000059787; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0049078; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0049054; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0049018; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0049017; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0048761; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0049511; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0048850; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0048684; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0048792; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0048759; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0048910; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0048759; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0049614; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0048449; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0048064; mus_musculus_wsbeij.
XX
CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Baylor Human Genome Sequencing Center
CC cDNA Library Preparation: Baylor Human Genome Sequencing Center
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAM Plate: 28 Row: k Column: 4.
XX
FH Key Location/Qualifiers
FH
FT source 1..3582
FT /organism="Mus musculus"
FT /mol_type="mRNA"
FT /clone_lib="NIH_MGC_284"
FT /clone="MGC:150161 IMAGE:40110531"
FT /tissue_type="PCR rescued clones"
FT /note="Vector: pCR-Blunt II-TOPO; Clone identification
FT sequence tag: GTTCTAT sequenced from the reverse primer"
FT /db_xref="taxon:10090"
FT gene 1..3582
FT /gene="Dsg2"
FT CDS 146..3514
FT /codon_start=1
FT /gene="Dsg2"
FT /product="desmoglein 2"
FT /db_xref="GOA:O55111"
FT /db_xref="InterPro:IPR002126"
FT /db_xref="InterPro:IPR009122"
FT /db_xref="InterPro:IPR009123"
FT /db_xref="InterPro:IPR015919"
FT /db_xref="InterPro:IPR020894"
FT /db_xref="MGI:MGI:1196466"
FT /db_xref="UniProtKB/Swiss-Prot:O55111"
FT /protein_id="AAI31655.1"
FT /translation="MARSPGDRCALLLLVQLLAVVCLDFGNGLHLEVFSPRNEGKPFPK
FT HTHLVRQKRAWITAPVALREGEDLSRKNPIAKIHSDLAEEKGIKITYKYTGKGITEPPF
FT GIFVFDRNTGELNITSILDREETPYFLLTGYALDSRGNNLEKPLELRIKVLDINDNEPV
FT FTQEVFVGSIEELSAAHTLVMKITATDADDPETLNAKVSYRIVSQEPANSHMFYLNKDT
FT GEIYTTSFTLDREEHSSYSLTVEARDGNGQITDKPVQQAQVQIRILDVNDNIPVVENKM
FT YEGTVEENQVNVEVMRIKVTDADEVGSDNWLANFTFASGNEGGYFHIETDTQTNEGIVT
FT LVKEVDYEEMKKLDLSIIVTNKAAFHKSILSKYKATPIPITVKVKNVVEGIHFKSSVVS
FT FRASEAMDRSSLSRSIGNFQVFDEDTGQAAKVTYVKVQDTDNWVSVDSVTSEIKLVKIP
FT DFESRYVQNGTYTAKVVAISKEHPQKTITGTIVITVEDVNDNCPVLVDSVRSVCEDEPY
FT VNVTAEDLDGAQNSAPFSFSIIDQPPGTAQKWKITHQESTSVLLQQSERKRGRSEIPFL
FT ISDSQGFSCPERQVLQLTVCECLKGGGCVAAQYDNYVGLGPAAIALMILALLLLLLVPL
FT LLLICHCGGGAKGFTPIPGTIEMLHPWNNEGAPPEDKVVPSLLVADHAESSAVRGGVGG
FT AMLKEGMMKGSSSASVTKGQHELSEVDGRWEEHRSLLTAGATHHVRTAGTIAANEAVRT
FT RATGSSRDMSGARGAVAVNEEFLRSYFTEKAASYNGEDDLHMAKDCLLVYSQEDTASLR
FT GSVGCCSFIEGELDDLFLDDLGLKFKTLAEVCLGRKIDLDVDIEQRQKPVREASVSAAS
FT GSHYEQAVTSSESAYSSNTGFPAPKPLHEVHTEKVTQEIVTESSVSSRQSQKVVPPPDP
FT VASGNIIVTETSYAKGSAVPPSTVLLAPRQPQSLIVTERVYAPTSTLVDQHYANEEKVL
FT VTERVIQPNGGIPKPLEVTQHLKDAQYVMVRERESILAPSSGVQPTLAMPSVAAGGQNV
FT TVTERILTPASTLQSSYQIPSETSITARNTVLSSVGSIGPLPNLDLEESDRPNSTITTS
FT STRVTKHSTMQHSYS"
XX
SQ Sequence 3582 BP; 974 A; 906 C; 957 G; 745 T; 0 other;
ggctaccctt tctgacccgg gcacacctgg aaccgcaccc cgggtcccgc agagtcagag 60
aagggcggcc ccgggaggga cctgcccagg aggatccgca gggcgccggc gaggcccgga 120
ggcgagggcg cggcggatcg aggcgatggc gcggagcccg ggtgaccggt gcgccctgct 180
gctgctggtg cagctgctgg cggtggtctg cttggacttt ggaaacggac ttcacttaga 240
ggtcttcagc ccaagaaatg aaggcaaacc gttccctaag cacactcact tggttcgtca 300
aaagagggcc tggatcactg cccctgtggc tctgcgggag ggcgaagacc tgtccagaaa 360
gaacccgatt gccaagatac actctgacct tgcagaagaa aaagggataa aaatcacgta 420
caagtacact gggaagggaa ttacagaacc gcctttcggc atattcgtct ttgatagaaa 480
cacaggagaa ctgaacatca ctagcattct tgaccgggaa gaaacaccat attttctgct 540
gacaggctat gcattggact ccagaggaaa caacctggaa aagcccttgg aactacgcat 600
caaagttctg gacatcaatg acaacgagcc agtgttcaca caggaggtct ttgttgggtc 660
cattgaggaa ttgagtgcag cacatacact tgtgatgaaa atcaccgcca cagatgcaga 720
tgacccggag actctgaatg ctaaagtctc ctacagaatt gtctctcagg agcctgcaaa 780
tagtcatatg ttctacctaa ataaagacac gggggagatc tatacgacca gttttacttt 840
ggacagagag gaacacagca gctattcctt gacggtggaa gcaagagatg gtaacgggca 900
gataacagac aagccagtcc agcaagctca agttcagatc cgtatattgg atgtcaatga 960
caatatacct gtggtagaaa acaaaatgta tgaggggaca gtggaagaaa accaggtcaa 1020
tgtagaagtc atgcggatca aagtgaccga tgcagatgaa gtgggctctg ataactggct 1080
agcaaacttt acatttgcat caggaaatga agggggctat ttccacattg agactgacac 1140
acagactaat gaagggattg tgacccttgt caaggaagtg gactatgaag aaatgaagaa 1200
gctagacttg agcatcattg tcactaacaa agcagctttc cacaagtcca ttctgagcaa 1260
gtacaaggcc acgcccattc ccatcactgt caaggtcaag aacgtggttg aaggcattca 1320
tttcaagagc agcgtagtct ctttccgagc tagtgaggca atggatagat ccagcctcag 1380
caggtcgatt ggaaattttc aagtttttga tgaagacact ggtcaagcag ctaaagtaac 1440
atatgtaaaa gtgcaagaca ctgacaactg ggtctctgtg gactccgtca cttcagagat 1500
taagcttgta aagattcctg actttgaatc tagatatgtc caaaatggta cctacactgc 1560
aaaggttgtg gccatatcca aagaacatcc tcaaaaaacc atcactggca ccatcgttat 1620
cactgttgaa gacgtcaatg acaattgtcc cgtgctggtg gactctgtac ggagtgtctg 1680
tgaggatgaa ccatatgtga atgtcactgc agaggatttg gatggggccc agaacagtgc 1740
gccattcagc ttctccatca ttgaccagcc tcctggaacg gcacagaagt ggaaaataac 1800
gcaccaggaa agtaccagtg tgctgctgca gcagagcgag cggaaacgcg ggagaagtga 1860
gattcccttc ctcatttccg acagccaggg cttcagctgc cccgaaaggc aggtccttca 1920
gctcactgta tgcgagtgtc tgaagggcgg tggctgtgtg gctgcacagt atgacaacta 1980
cgtcgggttg ggccctgccg ccatcgctct catgattcta gcactcctgc tcctgctcct 2040
ggtgccgctc ttgctgttga tatgccactg tggagggggc gccaaaggct tcacccccat 2100
tcctgggaca atagagatgc tgcacccttg gaataatgaa ggggcacctc ctgaggacaa 2160
ggtggtgcca tcgcttctgg tggccgatca tgcagagagc tcggcagtga gaggcggcgt 2220
aggaggtgcg atgctcaagg aaggcatgat gaaaggcagc agctcagctt ccgttaccaa 2280
agggcagcat gagctgtctg aggttgacgg aagatgggaa gaacacagaa gcctcctcac 2340
cgctggggcc actcaccatg taaggacagc aggaaccatc gctgccaacg aagccgtaag 2400
gacaagagcc acggggtctt ccagagacat gagtggggct cgaggagccg ttgccgtgaa 2460
tgaggaattc ttaagaagtt acttcacaga gaaagcggcc tcctacaatg gggaagacga 2520
ccttcacatg gccaaagact gccttctcgt ttactctcag gaagacacgg cctccctccg 2580
aggctcggtc gggtgctgca gtttcatcga gggagaactc gatgacctgt tcctggatga 2640
tcttggcctt aaattcaaga ccctagctga agtttgccta ggtcgaaaga tcgatctgga 2700
tgtggacatt gaacagaggc agaagccggt cagagaagcg agcgtgagtg cagcttctgg 2760
ctcgcactat gagcaagcgg taaccagctc agagagcgcg tactcctcta acaccggctt 2820
ccccgccccc aaacctctgc acgaagtgca cacagagaaa gtcacacagg aaatcgtcac 2880
tgagagctct gtatcttcca ggcagagtca gaaggtagta ccgccacctg atcctgtggc 2940
ttctggtaat attatagtga cggaaacttc ctatgccaaa ggctcagcag tgccacccag 3000
cactgtgctc ctggctccca gacagccaca gagcctgatc gtgacagaga gggtgtatgc 3060
tccaacctcc accttggtgg atcagcatta tgccaatgaa gaaaaagtcc ttgttaccga 3120
acgagtgatc cagcctaatg ggggcatccc taagcccctt gaggtcaccc agcatctgaa 3180
agatgcacag tatgtaatgg tgagggaaag agagagcatc cttgctccca gctcaggcgt 3240
gcagcccact ctggcaatgc ccagcgtggc agcaggagga cagaatgtca ccgtgacaga 3300
aagaatacta actcctgctt ccactctgca gtccagctac cagattccca gtgaaacctc 3360
catcacggct aggaacactg tgctctctag tgtgggaagc ataggtcctc tgcccaattt 3420
agatctagag gaatctgatc gtcccaattc tactataacc acatcttcca ccagggtcac 3480
caagcatagc accatgcaac attcttactc ctaaagagaa gccagccgca gtcggatctg 3540
gaccttaact agcatccact ggatgtgtgt gtccatgccc ca 3582
//
