ID BC083354; SV 1; linear; mRNA; STD; MUS; 1015 BP.
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AC BC083354;
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DT 12-OCT-2004 (Rel. 81, Created)
DT 16-JUL-2006 (Rel. 88, Last updated, Version 4)
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DE Mus musculus prohibitin, mRNA (cDNA clone MGC:102157 IMAGE:5715690),
DE complete cds.
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KW MGC.
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OS Mus musculus (house mouse)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC Murinae; Mus; Mus.
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RN [1]
RP 1-1015
RX DOI; 10.1073/pnas.242603899.
RX PUBMED; 12477932.
RG Mammalian Gene Collection Program Team
RA Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D.,
RA Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F.,
RA Zeeberg B., Buetow K.H., Schaefer C.F., Bhat N.K., Hopkins R.F., Jordan H.,
RA Moore T., Max S.I., Wang J., Hsieh F., Diatchenko L., Marusina K.,
RA Farmer A.A., Rubin G.M., Hong L., Stapleton M., Soares M.B., Bonaldo M.F.,
RA Casavant T.L., Scheetz T.E., Brownstein M.J., Usdin T.B., Toshiyuki S.,
RA Carninci P., Prange C., Raha S.S., Loquellano N.A., Peters G.J.,
RA Abramson R.D., Mullahy S.J., Bosak S.A., McEwan P.J., McKernan K.J.,
RA Malek J.A., Gunaratne P.H., Richards S., Worley K.C., Hale S., Garcia A.M.,
RA Gay L.J., Hulyk S.W., Villalon D.K., Muzny D.M., Sodergren E.J., Lu X.,
RA Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S.,
RA Sanchez A., Whiting M., Madan A., Young A.C., Shevchenko Y., Bouffard G.G.,
RA Blakesley R.W., Touchman J.W., Green E.D., Dickson M.C., Rodriguez A.C.,
RA Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Krzywinski M.I.,
RA Skalska U., Smailus D.E., Schnerch A., Schein J.E., Jones S.J., Marra M.A.;
RT "Generation and initial analysis of more than 15,000 full-length human and
RT mouse cDNA sequences";
RL Proc. Natl. Acad. Sci. U.S.A. 99(26):16899-16903(2002).
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RN [2]
RC NIH-MGC Project URL: http://mgc.nci.nih.gov
RP 1-1015
RG NIH MGC Project
RA ;
RT ;
RL Submitted (01-OCT-2004) to the INSDC.
RL National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda,
RL MD 20892-2590, USA
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DR MD5; b48b2b4b7bdc095a4c1f98ea02895eee.
DR Ensembl-Gn; ENSMUSG00000038845; mus_musculus.
DR Ensembl-Gn; MGP_129S1SvImJ_G0018986; mus_musculus_129s1svimj.
DR Ensembl-Gn; MGP_AJ_G0018954; mus_musculus_aj.
DR Ensembl-Gn; MGP_AKRJ_G0018924; mus_musculus_akrj.
DR Ensembl-Gn; MGP_BALBcJ_G0018927; mus_musculus_balbcj.
DR Ensembl-Gn; MGP_C3HHeJ_G0018741; mus_musculus_c3hhej.
DR Ensembl-Gn; MGP_C57BL6NJ_G0019379; mus_musculus_c57bl6nj.
DR Ensembl-Gn; MGP_CASTEiJ_G0018295; mus_musculus_casteij.
DR Ensembl-Gn; MGP_CBAJ_G0018712; mus_musculus_cbaj.
DR Ensembl-Gn; MGP_DBA2J_G0018820; mus_musculus_dba2j.
DR Ensembl-Gn; MGP_FVBNJ_G0018809; mus_musculus_fvbnj.
DR Ensembl-Gn; MGP_LPJ_G0018890; mus_musculus_lpj.
DR Ensembl-Gn; MGP_NODShiLtJ_G0018836; mus_musculus_nodshiltj.
DR Ensembl-Gn; MGP_NZOHlLtJ_G0019419; mus_musculus_nzohlltj.
DR Ensembl-Gn; MGP_PWKPhJ_G0018066; mus_musculus_pwkphj.
DR Ensembl-Gn; MGP_WSBEiJ_G0018344; mus_musculus_wsbeij.
DR Ensembl-Tr; ENSMUST00000125172; mus_musculus.
DR Ensembl-Tr; MGP_129S1SvImJ_T0031841; mus_musculus_129s1svimj.
DR Ensembl-Tr; MGP_AJ_T0031786; mus_musculus_aj.
DR Ensembl-Tr; MGP_AKRJ_T0031771; mus_musculus_akrj.
DR Ensembl-Tr; MGP_BALBcJ_T0031775; mus_musculus_balbcj.
DR Ensembl-Tr; MGP_C3HHeJ_T0031572; mus_musculus_c3hhej.
DR Ensembl-Tr; MGP_C57BL6NJ_T0032295; mus_musculus_c57bl6nj.
DR Ensembl-Tr; MGP_CASTEiJ_T0031356; mus_musculus_casteij.
DR Ensembl-Tr; MGP_CBAJ_T0031487; mus_musculus_cbaj.
DR Ensembl-Tr; MGP_DBA2J_T0031626; mus_musculus_dba2j.
DR Ensembl-Tr; MGP_FVBNJ_T0031618; mus_musculus_fvbnj.
DR Ensembl-Tr; MGP_LPJ_T0031746; mus_musculus_lpj.
DR Ensembl-Tr; MGP_NODShiLtJ_T0031601; mus_musculus_nodshiltj.
DR Ensembl-Tr; MGP_NZOHlLtJ_T0032314; mus_musculus_nzohlltj.
DR Ensembl-Tr; MGP_PWKPhJ_T0031072; mus_musculus_pwkphj.
DR Ensembl-Tr; MGP_WSBEiJ_T0031051; mus_musculus_wsbeij.
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CC Contact: MGC help desk
CC Email: cgapbs-r@mail.nih.gov
CC Tissue Procurement: Dr. Jim Lin, University of Iowa
CC cDNA Library Preparation: M. Bento Soares, University of Iowa
CC cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
CC DNA Sequencing by: Sequencing Group at the Stanford Human Genome
CC Center, Stanford University School of Medicine, Stanford, CA 94305
CC Web site: http://www-shgc.stanford.edu
CC Contact: (Dickson, Mark) mcd@paxil.stanford.edu
CC Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
CC R. M.
CC Clone distribution: MGC clone distribution information can be found
CC through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
CC Series: IRAK Plate: 195 Row: c Column: 13
CC This clone was selected for full length sequencing because it
CC passed the following selection criteria: matched mRNA gi: 31560654.
CC Differences found between this sequence and the mouse C57BL/6J
CC genome (build 36) are described in misc_difference features below.
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FH Key Location/Qualifiers
FH
FT source 1..1015
FT /organism="Mus musculus"
FT /lab_host="DH10B"
FT /strain="C57BL/6"
FT /mol_type="mRNA"
FT /clone_lib="NIH_BMAP_FB0"
FT /clone="MGC:102157 IMAGE:5715690"
FT /tissue_type="Mouse, brain 12.5 dpc"
FT /note="Vector: pYX-ASC"
FT /db_xref="taxon:10090"
FT gene 1..1015
FT /gene="Phb"
FT /note="synonym: BAP32"
FT CDS 36..854
FT /codon_start=1
FT /gene="Phb"
FT /product="prohibitin"
FT /db_xref="GOA:P67778"
FT /db_xref="InterPro:IPR000163"
FT /db_xref="InterPro:IPR001107"
FT /db_xref="InterPro:IPR036013"
FT /db_xref="MGI:MGI:97572"
FT /db_xref="UniProtKB/Swiss-Prot:P67778"
FT /protein_id="AAH83354.1"
FT /translation="MAAKVFESIGKFGLALAVAGGVVNSALYNVDAGHRAVIFDRFRGV
FT QDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLP
FT RIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGL
FT ILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAIISAEGDSKAAE
FT LIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLPAGQSVLLQLPQ"
FT misc_difference 986..1015
FT /gene="Phb"
FT /note="polyA tail: 30 bases do not align to the mouse
FT genome."
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SQ Sequence 1015 BP; 265 A; 261 C; 281 G; 208 T; 0 other;
gaaagcaggt gtgagtggaa gcaacagaag gagtcatggc tgccaaagtg tttgagtcca 60
ttggaaagtt cggcctggcg ttggcagttg caggaggcgt ggtgaactct gctttgtata 120
atgtggatgc tggacacaga gctgtcatct ttgaccgatt ccgtggcgta caggacattg 180
tggtcgggga agggactcat ttcctcatcc cttgggtaca gaaaccaatt atctttgact 240
gccgctctcg accacggaac gtaccagtca tcactggtag caaagacttg cagaacgtca 300
atatcacact gcgaatcctc ttccggccgg tggccagcca gcttcctcgt atctacacca 360
gcattggcga ggactatgat gagcgggtcc tgccttctat caccacagag atcctcaagt 420
cggtggtggc tcgattcgat gctggagaat tgattaccca gcgagagctg gtctccaggc 480
aggtgagcga tgacctcaca gagcgagcgg caacatttgg gcttatcctg gatgacgtgt 540
ccctgacaca tctgaccttc gggaaggagt tcacagaggc agtagaagcc aaacaggtgg 600
ctcagcagga agcggagaga gccagatttg tggtggaaaa ggctgagcag cagaagaagg 660
cagccatcat ctctgctgag ggtgactcca aggccgctga gctgatcgcc aactcgctgg 720
ccacggcagg cgacggcctg atcgagctgc ggaagctgga ggccgccgag gacattgcgt 780
accagctctc ccgctctcgg aacatcacct acctgccagc gggccagtcc gtgcttctcc 840
agcttcccca gtgaggccag ccgggccacg gcctccatca tgctgaatga cgccttcctt 900
ctgccccacc ccagaaaatc actgtgaaat ttcatgattg gcttaaagtg aaggaaataa 960
aggtaaaatc acttcagatc tctaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa 1015
//
